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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCTGATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACACgtaagtgactttacttcccctattatatactaatagggtattctcttctgtgaaatgaagttttaggctatgatctggtgtataaaattgtgagtttctatttatgtag

Basic information

species Glycine max
transcript GLYMA04G08200.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G08200.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0008g02850.t01 (Vitis vinifera), 5'ss of exon 3
GCTGCTGATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACACgtaagtgactttacttcccctatt-atatactaatagggtattctcttctgtgaaatgaagttttaggctatgatctggtgtataaaat-tgtgagtttctatttatgtag
||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| |||   |||  |   ||| || | | | |    |  || | | ||   |  | |  | ||    |  ||||| || |  || |  | | ||   ||||   |      
GCTGCAGATTCTCAGATTGTCTCTGATTATGTGCGTTACTTTCTTCATCAACACACgtgagtacttttcttcttcctcttcaaagattgcctgcctaatgtgtt---tctagttgaatt---agtcatgatttgctaaattacttctctggacttctccctt-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10709899|gb|BF009623.1|BF009623
EST:     GATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACAC                         AATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
genomic: GATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACACgtaagtgact ... atttatgtagAATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
EST: gi|58022364|gb|CX709105.1|CX709105
EST:     GATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACAC                         AATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
genomic: GATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACACgtaagtgact ... atttatgtagAATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
EST: gi|58022573|gb|CX709314.1|CX709314
EST:     GATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACAC                         AATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
genomic: GATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACACgtaagtgact ... atttatgtagAATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
EST: gi|19934684|gb|BQ079714.1|BQ079714
EST:     CTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACAC                         AATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
genomic: CTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACACgtaagtgact ... atttatgtagAATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
EST: gi|58016325|gb|CX703067.1|CX703067
EST:     GATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACAC                         AATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
genomic: GATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACACgtaagtgact ... atttatgtagAATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
EST: gi|298174239|gb|HO017575.1|HO017575
EST:     GATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACAC                         AATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
genomic: GATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACACgtaagtgact ... atttatgtagAATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
EST: gi|23730341|gb|BU763264.1|BU763264
EST:     GATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACAC                         AATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
genomic: GATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACACgtaagtgact ... atttatgtagAATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
EST: gi|254320192|gb|GR829380.1|GR829380
EST:     TTCCTCCATCAACACCC                         AATACAACTTGAACAACCTGCAACAGTTAAAGTTGCTGC-AACCTTGTCCG
genomic: TTCCTCCATCAACACACgtaagtgact ... atttatgtagAATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
EST: gi|254320191|gb|GR829379.1|GR829379
EST:     GATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACAC                         AATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
genomic: GATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACACgtaagtgact ... atttatgtagAATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
EST: gi|213619813|gb|DB969477.1|DB969477
EST:     GATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACAC                         AATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
genomic: GATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACACgtaagtgact ... atttatgtagAATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
EST: gi|33388670|gb|CA851877.1|CA851877
EST:     GATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACAC                         AATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
genomic: GATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACACgtaagtgact ... atttatgtagAATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
EST: gi|298192887|gb|HO033321.1|HO033321
EST:     GATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACAC                         AATACAACTTGGGCAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
genomic: GATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACACgtaagtgact ... atttatgtagAATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
EST: gi|15813603|gb|BI785878.1|BI785878
EST:     GATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACAC                         AATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
genomic: GATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACACgtaagtgact ... atttatgtagAATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
EST: gi|58019397|gb|CX706139.1|CX706139
EST:     GATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACAC                         AATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG
genomic: GATTCTCAGATTGTCTCTGATTATGTGCGTTACTTCCTCCATCAACACACgtaagtgact ... atttatgtagAATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCG