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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTTCAGTCCCAGAAAAGCATCTCATCAATTGGCATACCTTCTGATCCTCAAAGTAGTGCTGACATTCAGATTGATTCTTCTGAATATGTCAATCATGgcaagtattctgttatagtctgcttatctattatctctgttggcttattagttagtctcatacgttatcaaagggtgcttgtaatcttgtatcatcctgg...

Basic information

species Glycine max
transcript GLYMA04G07120.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298186285|gb|HO036918.1|HO036918
EST:     TCAAAGTAGTGCTGACATTCAGATTGATTCTTCTGAATATGTCAATCATG                         GTCTTCTTCTCTGGAACCAGATGAGACGACAGTGGGTTGGAAACAGAAGGC
genomic: TCAAAGTAGTGCTGACATTCAGATTGATTCTTCTGAATATGTCAATCATGgcaagtattc ... atgtatgcagGTCTTCTTCTCTGGAACCAGATGAGACGACAGTGGGTTGGAAACAGAAGGC
EST: gi|151409723|gb|EV279531.1|EV279531
EST:     TCAAAGTAGTGCTGACATTCAGATTGATTCTTCTGAATATGTCAATCATG                         GTCTTCTTCTCTGGAACCAGATGAGACGACAGTGGGTTGGAAACAGAAGGC
genomic: TCAAAGTAGTGCTGACATTCAGATTGATTCTTCTGAATATGTCAATCATGgcaagtattc ... atgtatgcagGTCTTCTTCTCTGGAACCAGATGAGACGACAGTGGGTTGGAAACAGAAGGC
EST: gi|58020771|gb|CX707513.1|CX707513
EST:     TCAAAGTAGTGCTGACATTCAGATTGATTCTTCTGAATATGTCAATCATG                         GTCTTCTTCTCTGGAACCAGATGAGACGACAGTGGGTTGGAAACAGAAGGC
genomic: TCAAAGTAGTGCTGACATTCAGATTGATTCTTCTGAATATGTCAATCATGgcaagtattc ... atgtatgcagGTCTTCTTCTCTGGAACCAGATGAGACGACAGTGGGTTGGAAACAGAAGGC
EST: gi|192332868|gb|FK024965.1|FK024965
EST:     TCAAAGTAGTGCTGACATTCAGATTGATTCTTCTGAATATGTCAATCATG                         GTCTTCTTCTCTGGAACCAGATGAGGCGACAGTGGGTTGGAAACAGAAGGC
genomic: TCAAAGTAGTGCTGACATTCAGATTGATTCTTCTGAATATGTCAATCATGgcaagtattc ... atgtatgcagGTCTTCTTCTCTGGAACCAGATGAGACGACAGTGGGTTGGAAACAGAAGGC
EST: gi|298185514|gb|HO030727.1|HO030727
EST:     TCAAAGTAGTGCTGACATTCAGATTGATTCTTCTGAATATGTCAATCATG                         GTCTTCTTCTCTGGAACCAGATGAGACGACAGTGGGTTGGAAACA
genomic: TCAAAGTAGTGCTGACATTCAGATTGATTCTTCTGAATATGTCAATCATGgcaagtattc ... atgtatgcagGTCTTCTTCTCTGGAACCAGATGAGACGACAGTGGGTTGGAAACA