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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCATTCCAAAAGCTCTCATGCCTCTCGAGgtatttgtgccaccaccttagcaacttctttaacaatttttaatcattttgtttatttttctttccacatgcagttaatttaatcaattgctttatttat...

Basic information

species Glycine max
transcript GLYMA04G05550.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016135|gb|CX702877.1|CX702877
EST:     GATCATTCCAAAAGCTCTCATGCCTCTCGAG                         ATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAG
genomic: GATCATTCCAAAAGCTCTCATGCCTCTCGAGgtatttgtgc ... attttgacagATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAG
EST: gi|308098158|gb|HO761329.1|HO761329
EST:     GATCATTCCAAAAGCTCTCATGCCTCTCGAG                         ATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAG
genomic: GATCATTCCAAAAGCTCTCATGCCTCTCGAGgtatttgtgc ... attttgacagATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAG
EST: gi|151400828|gb|EV270642.1|EV270642
EST:     GACCATTCCAAAAGCTCTCATGCCTCTCGAG                         ATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAG
genomic: GATCATTCCAAAAGCTCTCATGCCTCTCGAGgtatttgtgc ... attttgacagATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAG
EST: gi|151403620|gb|EV273430.1|EV273430
EST:     GATCATTCCAAAAGCTCTCATGCCTCTCGAG                         ATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAG
genomic: GATCATTCCAAAAGCTCTCATGCCTCTCGAGgtatttgtgc ... attttgacagATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAG
EST: gi|254318543|gb|GR832711.1|GR832711
EST:     GATCATTCCAAAAGCTCTCATGCCTCTCGAG                         ATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAG
genomic: GATCATTCCAAAAGCTCTCATGCCTCTCGAGgtatttgtgc ... attttgacagATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAG
EST: gi|192296477|gb|FG991627.1|FG991627
EST:     GATCATTCCAAAAGCTCTCATGCCTCTCGAG                         ATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAG
genomic: GATCATTCCAAAAGCTCTCATGCCTCTCGAGgtatttgtgc ... attttgacagATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAG
EST: gi|120494056|gb|EH222223.1|EH222223
EST:     GATCATTCCAAAAGCTCTCATGCCTCTCGAG                         ATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAG
genomic: GATCATTCCAAAAGCTCTCATGCCTCTCGAGgtatttgtgc ... attttgacagATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAG
EST: gi|209721044|gb|BW666301.1|BW666301
EST:     GATCATTCCAAAAGCTCTCATGCCTCTCGAG                         ATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAG
genomic: GATCATTCCAAAAGCTCTCATGCCTCTCGAGgtatttgtgc ... attttgacagATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAG
EST: gi|120494245|gb|EH222412.1|EH222412
EST:     GATCATTCCAAAAGCTCTCATGCCTCTCGAG                         ATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAG
genomic: GATCATTCCAAAAGCTCTCATGCCTCTCGAGgtatttgtgc ... attttgacagATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAG
EST: gi|151394491|gb|EV264362.1|EV264362
EST:     GATCATTCCAAAAGCTCTCATGCCTCTCGAG                         ATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAG
genomic: GATCATTCCAAAAGCTCTCATGCCTCTCGAGgtatttgtgc ... attttgacagATATCTGGTGAAACAGTAGGTGAAGTGAGGATTGTTTCAGATATGCACGAG