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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTGCCGCAGTAAAGTGGATAAGGAAAAATTGACTTCAGGGACAAGGGTGGTTCTTGATATGACAACACTCACCATAATGCGAGCTCTTCCTCGAGAAgtaagtcgtagtttattattttaatattttcattttatgaacatgttcttttcctgttgtgctaagatctgatttattggatccctggtggtcactattgtctctaattctttgtcgttggagttgccag

Basic information

species Glycine max
transcript GLYMA04G03180.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G03180.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g13090.t01 (Vitis vinifera), 5'ss of exon 3
TGGTTGCCGCAGTAAAGTGGATAAGGAAAAATTGACTTCAGGGACAAGGGTGGTTCTTGATATGACAACACTCACCATAATGCGAGCTCTTCCTCGAGAAgtaagt---cgtagtttattattttaatattttcattttatgaacatgttcttttcctgttgtgctaagatctgatttattggatccctggtggtcactattgtctctaattctttg--tcgttggagttgccag-----------------------------------------------------------
||| || |||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||||||| || |||||||||||||| || |||||||||   | | |||   ||| |  |  ||    | | || | ||  |   |  | |  ||   | |||  ||||  |||  |  ||   ||||||  ||| | |  ||   |||   | ||   | |    |                                                            
TGGCTGTCGCAGTAAAGTGGATAAGGAAAAACTGACTTCTGGAACAAGAGTGGTTCTTGATATGACAACACTCACAATCATGCGAGCTCTTCCACGTGAAgtaagttaccatggttctctatgtggactttgctgtgtaat-accaactggataacttagtggcattagaattgatg-att--actccatttggtcatgattattttcaacattttagttagtgacaatcataaaagaaaaaagagagtttgtgtggttctcctgatagactgtgctatgatgatgtttaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405441|gb|EV275255.1|EV275255
EST:     TGGTTCTTGATATGACAACACTCACCATAATGCGAGCTCTTCCTCGAGAA                         GCTGATCCAGTAGTTTACAATATGTTGCATGAAGATCCTGGTAATATCAGC
genomic: TGGTTCTTGATATGACAACACTCACCATAATGCGAGCTCTTCCTCGAGAAgtaagtcgta ... gagttgccagGTTGATCCAGTAGTTTACAATATGTTGCATGAAGATCCTGGTAATATCAGC
EST: gi|7285516|gb|AW598003.1|AW598003
EST:     TGGTTCTTGATATGACAACACTCACCATAATGCGAGCTCTTGCTCGAGAA                         GTTGATCCAGTAGTTTACAATATGTTGCATGAAGATCCTGATAATATCAGC
genomic: TGGTTCTTGATATGACAACACTCACCATAATGCGAGCTCTTCCTCGAGAAgtaagtcgta ... gagttgccagGTTGATCCAGTAGTTTACAATATGTTGCATGAAGATCCTGGTAATATCAGC
EST: gi|254341452|gb|GR850665.1|GR850665
EST:     TGGTTCTTGATATGACAACACTCACCATAATGCGAGCTCTTCCTCGAGAA                         GTTGATCCAGTAGTTTACAATATGTTGCATGAAGATCCTGGTAATATCAGC
genomic: TGGTTCTTGATATGACAACACTCACCATAATGCGAGCTCTTCCTCGAGAAgtaagtcgta ... gagttgccagGTTGATCCAGTAGTTTACAATATGTTGCATGAAGATCCTGGTAATATCAGC