1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTACAATAGATTAAGACCCTTGAGCTATCGAGGAGCTGATGTCTTCATACTTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgtttatttcttcggttcaagaattcaattaggatggtaattatttaaatcgatttcttcacttagtatatataactgatgaaattattgctcttttgatttcttctttcag
species | Glycine max |
transcript | GLYMA04G02530.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAG TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTEST: gi|207827775|gb|GD800368.1|GD800368
genomic: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgtttatttct ... cttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
EST: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAG TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATEST: gi|9563948|gb|BE473457.1|BE473457
genomic: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgtttatttct ... cttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAAT
EST: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAG TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTEST: gi|207836636|gb|GD806633.1|GD806633
genomic: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgtttatttct ... cttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
EST: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAG TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATEST: gi|37996148|gb|CF807737.1|CF807737
genomic: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgtttatttct ... cttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAAT
EST: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAG TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTEST: gi|15288013|gb|BI471904.1|BI471904
genomic: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgtttatttct ... cttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
EST: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAG TGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
genomic: TTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgtttatttct ... cttctttcagTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACAATAGATTAAGACCCTTGAGCTATCGAGGAGCTGATGTCTTCATACTTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGgtttatttcttcggttcaagaattcaattaggatggtaattatttaaatcgatttcttcacttagtatatataactgatgaaattattgctcttttgatttcttctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG