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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTTGCACACGGGACAGCAACTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGgtttgtctgttgaacttcttccttttttttctgctggacttttcggtgtccttacgtcttcttgtattgactagcag

Basic information

species Glycine max
transcript GLYMA04G01970.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01970.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0122g01410.t01 (Vitis vinifera), 5'ss of exon 9
GTATTTTGCACACGGGACAGCAACTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGgtttgtctgttg-aacttcttccttttttttc------tgctggacttttcggtgtccttacgtctt--cttgtattgactagcag---
|||| | || || |||||||| || |||| |||||||||  ||||  |||| ||||||||||||||||| |||||| ||    || |   |||| ||||  | |       ||| | ||| ||   | |  |     |||  ||| |||  | |  | |   
GTATCTGGCTCATGGGACAGCGACAGATTACATGTATGATGTTGTAAGGGTGCCCATGGCTTTCACCTTCGAGgttcgtgaaatgcagagtctttctttactgttatcgattgcagcactcttacatatgatggttccttgacttttatgcattccctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209714282|gb|BW677022.1|BW677022
EST:     CTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAG                         ATATATGGTGATGGAACTGCCTCATCGAGAGATTGTTTCAAAATGTTCAAT
genomic: CTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGgtttgtctgt ... tgactagcagATATATGGTGATGGAACTGCCTCATCGAGAGATTGTTTCAAAATGTTCAAT
EST: gi|192327836|gb|FK022423.1|FK022423
EST:     CTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAG                         ATATATGGTGATGGAACTGCCTCATCGAGAGATTGTTTCAAAATGTTCAAT
genomic: CTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGgtttgtctgt ... tgactagcagATATATGGTGATGGAACTGCCTCATCGAGAGATTGTTTCAAAATGTTCAAT