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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATTACAAAACTCCTATACCTACTGAATCAGGGAGAGACGTTTACAAAGgtatagaatgatatccatcaccgtgcttatttgtggaattgtcttagagacacctattaattcctttttgggtaattttatttttgctag

Basic information

species Glycine max
transcript GLYMA04G01470.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01470.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 3
GTTATTACAAAACTCCTATACCTACTGAATCAGGGAGAGACGTTTACAAAGgta-----tagaatg-----atatccatcacc-------gtgcttatttgtggaat-tgtcttagagacacctattaattcctttttgggtaattttatttttgctag----------
|| |||||||| || || || ||||||||||| |||||||| |||||||||||      || | ||     || | | |||          || | ||||     ||   || | || |||    |   | | ||| |   | || | ||||||||             
GTCATTACAAAGCTTCTGTATCTACTGAATCAAGGAGAGACATTTACAAAGgtgaattttatagtgttttaattttcttcattttgaggtatgttaatttacatgatgcatcatggaaacataggtccttccttttataaatgatct-atttttgcacaaaatttacag