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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCAAGATTTAGTACCCGGTTGCAACAAAGTCACGGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGgtaattaagagttaggttgattcctctttgcctttcacattgatctattcaaaattcatgtaaacctcacttcatatgcag

Basic information

species Glycine max
transcript GLYMA04G01400.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01400.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S68_190V6.1 (Physcomitrella patens), 5'ss of exon 3
TTTGCAAGATTTAGTACCCGGTTGCAACAAAGTCACGGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGgtaattaagagttaggttgattcctctttgcctttcacattgatctattcaaaattcatgtaaacctcacttcatatgcag---------------------------------------------------------
  |||| ||  | |||||||| |||  ||||||||| || || || |  |||||||| || |||||||||||||||||||| || |||||||||||||| |||  |      |       || |      |   | |   |  || |||||    | | | |  | ||   | ||    ||                                                         
CCTGCAGGACCTCGTACCCGGCTGCCGCAAAGTCACCGGCAAGGCAGTCATGCTTGACGAGATCATCAACTATGTTCAATCCCTCCAACGACAAGTTGAAgtatgt---ctcttacccattttcaacgcactgctaatgctattccattcatgtcttaggcacccttcttgttatcgctagtgatgaattgtagtctagtattgagttgtatcgtacactttgttatcttttttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22522813|gb|BU081624.1|BU081624
EST:     TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAG                         TTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG
genomic: TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGgtaattaaga ... tcatatgcagTTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG
EST: gi|33389906|gb|CA853113.1|CA853113
EST:     TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAG                         TTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG
genomic: TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGgtaattaaga ... tcatatgcagTTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG
EST: gi|10843511|gb|BF066800.1|BF066800
EST:     TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAG                         TTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG
genomic: TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGgtaattaaga ... tcatatgcagTTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG
EST: gi|22522891|gb|BU081702.1|BU081702
EST:     TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAG                         TTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG
genomic: TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGgtaattaaga ... tcatatgcagTTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG
EST: gi|10846479|gb|BF069354.1|BF069354
EST:     TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAG                         TTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG
genomic: TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGgtaattaaga ... tcatatgcagTTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG
EST: gi|13125350|gb|BG315920.1|BG315920
EST:     TGCTTGATGAAATCATCAACTATGGTCAATCTCTTCAACGACAAGTTGAG                         TTTCTCTCAATGAAATTAGCTGCTGGGAACCCAAGGCTTGACTTCAGTATG
genomic: TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGgtaattaaga ... tcatatgcagTTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG
EST: gi|10847455|gb|BF071548.1|BF071548
EST:     TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAG                         TTTCTCTCAATGAAATTAGCTGCTGTGAACCCA
genomic: TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGgtaattaaga ... tcatatgcagTTTCTCTCAATGAAATTAGCTGCTGTGAACCCA
EST: gi|19348569|gb|BM893101.1|BM893101
EST:     TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAG                         TTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG
genomic: TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGgtaattaaga ... tcatatgcagTTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCAGTATG