1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATTTTTGAAAGCGAGGAAGTTTGATATTGAAAAGGCAAAGCATATGTGGACTGACATGCTACAATGGAGGAAGGAGTTTGGTGCTGATACTATTGTGCAGgtaaatgcagttggaatttgggacatttatttggcttctgctttggcaggtttgagtacaaggaacacgacatgcttttcattgattgattggcttacctactgtttcatgttttcatcag
species | Glycine max |
transcript | GLYMA04G01220.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGATATGCTACAATGGAGGAAGGAGTTTGGTGCTGATACTATTGTGCAG GATTTTGAGTTCAAGGAGTTAGATGAAGTCGTGAAGTATTATCCACATGGCEST: gi|16347849|gb|BI973444.1|BI973444
genomic: CTGACATGCTACAATGGAGGAAGGAGTTTGGTGCTGATACTATTGTGCAGgtaaatgcag ... ttttcatcagGATTTTGAGTTCAAGGAGTTAGATGAAGTCGTGAAGTATTATCCACATGGC
EST: CTGACATGCTACAATGGAGGAAGGAGTTTGGTGCTGATACTATTGTGCAG GATTTTGAGTTCAAGGAGTTAGATGAAGTCGTGAAGTATTATCCACATGGCEST: gi|209709869|gb|BW657267.1|BW657267
genomic: CTGACATGCTACAATGGAGGAAGGAGTTTGGTGCTGATACTATTGTGCAGgtaaatgcag ... ttttcatcagGATTTTGAGTTCAAGGAGTTAGATGAAGTCGTGAAGTATTATCCACATGGC
EST: CTGACATGCTACAATGGAGGAAGGAGTTTGGTGCTGATACTATTGTGCAG GATTTTGAGTTCAAGGAGTTAGATGAAGTCGTGAAGTATTATCCACATGGCEST: gi|151406570|gb|EV276385.1|EV276385
genomic: CTGACATGCTACAATGGAGGAAGGAGTTTGGTGCTGATACTATTGTGCAGgtaaatgcag ... ttttcatcagGATTTTGAGTTCAAGGAGTTAGATGAAGTCGTGAAGTATTATCCACATGGC
EST: CTGACATGCTACAATGGAGGAAGGAGTTTGGTGCTGATACTATTGTGCAG GATTTTGAGTTCAAGGAGTTAGATGAAGTCGTGAAGTATTATCCACATGGCEST: gi|209712291|gb|BW668485.1|BW668485
genomic: CTGACATGCTACAATGGAGGAAGGAGTTTGGTGCTGATACTATTGTGCAGgtaaatgcag ... ttttcatcagGATTTTGAGTTCAAGGAGTTAGATGAAGTCGTGAAGTATTATCCACATGGC
EST: CTGACATGCTACAATGGAGGAAGGAGTTTGGTGCTGATACTATTGTGCAG GATTTTGAGTTCAAGGAGTTAGATGAAGTCGTGAAGTATTATCCACATGGCEST: gi|209728326|gb|BW658538.1|BW658538
genomic: CTGACATGCTACAATGGAGGAAGGAGTTTGGTGCTGATACTATTGTGCAGgtaaatgcag ... ttttcatcagGATTTTGAGTTCAAGGAGTTAGATGAAGTCGTGAAGTATTATCCACATGGC
EST: CTGACATGCTACAATGGAGGAAGGAGTTTGGTGCTGATACTATTGTGCAG GATTTTGAGTTCAAGGAGTTAGATGAAGTCGTGAAGTATTATCCACATGGCEST: gi|151395356|gb|EV265227.1|EV265227
genomic: CTGACATGCTACAATGGAGGAAGGAGTTTGGTGCTGATACTATTGTGCAGgtaaatgcag ... ttttcatcagGATTTTGAGTTCAAGGAGTTAGATGAAGTCGTGAAGTATTATCCACATGGC
EST: CTGACATGCTACAATGGAGGAAGGAGTTTGGTGCTGATACTATTGTGCAG GATTTTGAGTTCAAGGAGTTAGATGAAGTCGTGAAGTATTATCCACATGGCEST: gi|254346081|gb|GR859694.1|GR859694
genomic: CTGACATGCTACAATGGAGGAAGGAGTTTGGTGCTGATACTATTGTGCAGgtaaatgcag ... ttttcatcagGATTTTGAGTTCAAGGAGTTAGATGAAGTCGTGAAGTATTATCCACATGGC
EST: CTGACATGCTACAATGGAGGAAGGAGTTTGGTGCTGATACTATTGTGCAG GATTTTGAGTTCAAGGAGTTAGATGAAGTCGTGAAGTATTATCCACATGGC
genomic: CTGACATGCTACAATGGAGGAAGGAGTTTGGTGCTGATACTATTGTGCAGgtaaatgcag ... ttttcatcagGATTTTGAGTTCAAGGAGTTAGATGAAGTCGTGAAGTATTATCCACATGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTTTGAAAGCGAGGAAGTTTGATATTGAAAAGGCAAAGCATATGTGGACTGACATGCTACAATGGAGGAAGGAGTTTGGTGCTGATACTATTGTGCAGgtaaatgcagttggaatttgggacatttatttggcttctgctttggcaggtttgagtacaaggaacacgacatgcttttcattgattgattggcttacctactgtttcatgttttcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT