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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGgtaagttgaatatgtaaggtgatattaatctttaatttattccgtgtctgccctgttgttttgttttatgtttctggactctggtatgttcagttctgta...

Basic information

species Glycine max
transcript GLYMA04G01140.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01140.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g58530.1 (Oryza sativa), 5'ss of exon 3
GTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGgtaagttgaatatgtaaggtgatattaatctttaatttattccgtgtctgccctgttgttttgttttatgtttctggactctggtatgttcagttctgta--
|| ||| |||||||||||||| ||||| |||||| |||| ||| ||||||||||||  ||| ||||||||| || |  |  ||     |   | || | | |   || ||   |||   |     ||      | | |   |    |||    |  ||  || |  ||   
GTTTTGCAAATGTGAGATGCCATACAATCCTGATAACCTTATGATCCAATGTGAGGATTGCTCTGACTGgtgagatacagctgacgcattcaactagtttctgtatttttgaatgttaccaaacctgagaaaatctttacatt--aactgcaatcagtaaagctaggtgta

upper sequence: GLYMA04G01140.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os07g08880.3 (Oryza sativa), 5'ss of exon 3
GTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGgtaagttgaatatgtaaggtgatattaatctttaatttattccgtgtctgccctgttgttttgttttatgtttctggac-tctggtatgttcagttctgta
||  || || ||||||||||| ||||| ||||||||||| ||| ||||||||||||  ||| |||| |||| |||     ||| ||      ||| |  || |  || ||||    |||| ||| |||    ||||||| || |   | ||| |                
GTTCTGCAAGTGTGAGATGCCATACAATCCTGATGACCTTATGATCCAATgtgaggaatgctctgattggtgagta----atgaaataattcatttaaattcatctttttcctgaactgcgctggtgtac-attttatggttttatccctcttgc---------------

upper sequence: GLYMA04G01140.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os07g08880.2 (Oryza sativa), 5'ss of exon 3
GTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGgtaagt--tgaatatgtaaggtgatattaatctttaatttattccgtgtctgc-cctgttgttttgttttatgtttctggactctggtatgttcagttctgta
||  || || ||||||||||| ||||| ||||||||||| ||| ||||||||||||  ||| |||| |||| |||  ||||    |    | | ||| ||||||    |   | | |   |      || | | |||||||   ||| | | ||||  ||   ||  |    
GTTCTGCAAGTGTGAGATGCCATACAATCCTGATGACCTTATGATCCAATGTGAGGAATGCTCTGATTGgtgagtaatgaaataattcatttaaattcatctttttcctgaactgcgctggtgtacattttatggttttatccctcttgccactgg-gtgaataggacaa--

upper sequence: GLYMA04G01140.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0038g00160.t01 (Vitis vinifera), 5'ss of exon 3
GTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGgtaagttgaatatgtaaggtgatattaatctttaatttattccgtgtctgccctgttgttttgttttatgtt--tctggactctggtatgttcagttctgta
|||||||||||| ||||||||||||||||| |||||||||||||| || |||||||| |||||||| |||| ||||   |   |  |      ||||  |||  ||| |  |  || ||       | ||  || ||  ||  | |||| | |           | || | 
GTATTGTAAATGCGAGATGCCTTACAACCCCGATGACCTAATGGTGCAGTGTGAGGGGTGCACTGATTGgtgagttatttgctttggacctgtttaagattt--tttgtctcaggtttggtggacagattctttgtaacttgatttggattgttcctcagaatatactttt

upper sequence: GLYMA04G01140.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S298_65V6.1 (Physcomitrella patens), 5'ss of exon 3
GTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGgtaagttgaatatgtaaggtgatattaatctttaatttattcc---gtgtctgccctgttgttttgttttatgtttctggactctggtatgttcagttctgta--
 ||||| || || |||||||||||||| ||||||||| | ||||| ||||||||   |||||  |||||||| |   |   |     ||   | |       | |  ||| |   || | ||||| | | |||      | |     ||  ||| |  ||   || | || |  
TTATTGCAAGTGCGAGATGCCTTACAATCCTGATGACTTGATGGTTCAATGTGAAATCTGCAAAGACTGgtaggcctatgcttctctgttcaactgcgacaaagtgcatttctttgtatttgcccggatatttg----caagaggacggtttcttgagtgaggagct-tgcacc

upper sequence: GLYMA04G01140.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S307_14V6.1 (Physcomitrella patens), 5'ss of exon 3
GTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGgtaagttgaatatgtaaggtgata--ttaatctttaatttattccgtgtctgccctgttgttttgttttatgtttctggactctggtatgttcagttctgta
|||||||||||||||||||||||| || || |||||  | ||||| |||||||||   ||||  || |||||||||   |   |    |  |   ||| ||  ||  || |     |  || | |||  ||           || | || ||||      | |   ||   
GTATTGTAAATGTGAGATGCCTTATAATCCAGATGATTTGATGGTTCAATGTGAGACTTGCAAAGATTGgtaagttctcttcatctcatccttatttagtcagtatattgtgagcagcttgtcttgtacttcaagaggcaaattgtagagtctgaatcactgaagcctt--

upper sequence: GLYMA04G01140.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ26805 (Selaginella moellendorffii), 5'ss of exon 3
GTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGgtaagt-tgaatatgtaaggtgatattaatctttaatttattccg-tgtctgccctgttgttttgttttatgtttctggactctggtatgttcagttctgta
||| || || || ||||||||||||||||| ||||| || ||||| || |||||||  ||||  ||||||||||  | | | | |           || | ||       |||| ||       ||                                             
GTACTGCAAGTGCGAGATGCCTTACAACCCGGATGATCTTATGGTGCAGTGTGAGGAGTGCAAAGACTGgtaagaatcagtttctctcaaatccaaaagccttggcagcctccgatgaaaaaaatggcag-----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196200|gb|HO044591.1|HO044591
EST:     CCTTACAACCCTGATGACCTAATGGTCCAATGTGTGGGCTGCACTGACTG                         GTTCCATCCTGCATGTATAGACA
genomic: CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGgtaagttgaa ... atgtattcagGTTCCATCCTGCATGTATAGACA
EST: gi|151404297|gb|EV274107.1|EV274107
EST:     CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTG                         GTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
genomic: CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGgtaagttgaa ... atgtattcagGTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
EST: gi|298184224|gb|HO029437.1|HO029437
EST:     CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTG                         GTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
genomic: CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGgtaagttgaa ... atgtattcagGTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
EST: gi|20811514|gb|BQ295992.1|BQ295992
EST:     CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTG                         GTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
genomic: CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGgtaagttgaa ... atgtattcagGTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
EST: gi|298169727|gb|HO021087.1|HO021087
EST:     CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTG                         GTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
genomic: CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGgtaagttgaa ... atgtattcagGTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
EST: gi|193618792|gb|FK572118.1|FK572118
EST:     CCTTACAACCCTGATGACCTAATGGTGCAATGCGAGGGCTGCACTGACTG                         GTTCCATCCTGCTTGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
genomic: CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGgtaagttgaa ... atgtattcagGTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
EST: gi|27427183|gb|CA938703.1|CA938703
EST:     CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTG                         GTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
genomic: CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGgtaagttgaa ... atgtattcagGTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
EST: gi|254330184|gb|GR839737.1|GR839737
EST:     CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTG                         GTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
genomic: CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGgtaagttgaa ... atgtattcagGTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
EST: gi|254316702|gb|GR828239.1|GR828239
EST:     CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTG                         GTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
genomic: CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGgtaagttgaa ... atgtattcagGTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
EST: gi|208110150|gb|GD904900.1|GD904900
EST:     CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTG                         GTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
genomic: CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGgtaagttgaa ... atgtattcagGTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
EST: gi|254330185|gb|GR839738.1|GR839738
EST:     CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTG                         GTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
genomic: CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGgtaagttgaa ... atgtattcagGTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
EST: gi|15285488|gb|BI469379.1|BI469379
EST:     CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTG                         GTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTC-A
genomic: CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGgtaagttgaa ... atgtattcagGTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
EST: gi|298163162|gb|HO011895.1|HO011895
EST:     CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTG                         GTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGC-AAAAGACTTGA
genomic: CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGgtaagttgaa ... atgtattcagGTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
EST: gi|254316701|gb|GR828238.1|GR828238
EST:     CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTG                         GTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA
genomic: CCTTACAACCCTGATGACCTAATGGTCCAATGTGAGGGCTGCACTGACTGgtaagttgaa ... atgtattcagGTTCCATCCTGCATGTATAGACATGACTGTGGAAGAAGCCAAAAGACTTGA