Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAAGCTGAAAACCATTGTACAAGTCAAACGCGATCACTGATTGATCAGATTAGCTTGCAACAAGGACGAATTGTGGCCCTAGAAGgtttgctttttatttattaattaattaattgtggaatgttgtcttacatttatctctgtttgcatgaatgtcttggccatactaaaatgttctcctacag...

Basic information

species Glycine max
transcript GLYMA04G00200.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G00200.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s0585g00030.t01 (Vitis vinifera), 5'ss of exon 3
ATTGAAGCTGAAAACCATTGTACAAGTCAAACGCGATCACTGATTGATCAGATTAGCTTGCAACAAGGACGAATTGTGGCCCTAGAAGgtttgctttttatttattaattaattaattgtggaatgttgtct-tacatttatctctgtttgcatgaatgtcttggccatactaaaatgttctcctacag-
 | || || |||||||| ||||| ||||||| |||||| ||||||||||| || ||  ||||||||||||||||||||||||| ||||||| | | | |  |||||| ||  ||  || |      ||   | |||||      | ||    | |  |   | |   |||     ||| ||    |  | 
GTGGAGGCAGAAAACCAGTGTACCAGTCAAATGCGATCTCTGATTGATCAAATAAGTATGCAACAAGGACGAATTGTGGCCCTTGAAGgttag-tctgtgattattagttgcttt-ttctattccattccttgtacatgatatccagtactaaagggttaatagcgtatatgtggatggtcatacattgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192297484|gb|FG989519.1|FG989519
EST:     ACTGATTGATCAGATTAGCTTGCAACAAGGACGAATTGTGGCCCTAGAAG                         AAGAGCGGAAACGCCGAGACCAAGAATGTGGACAAATGAAGTCTCTTGTAC
genomic: ACTGATTGATCAGATTAGCTTGCAACAAGGACGAATTGTGGCCCTAGAAGgtttgctttt ... attctttcagAAGAGCGGAAACGCCGAGACCAAGAATGTGGACAAATGAAGTCTCTTGTAC
EST: gi|298181686|gb|HO025861.1|HO025861
EST:     ACTGATTGATCAGATTAGCTTGCAACAAGGACGAATTGTGGCCCTAGAAG                         AAGAGCGGAAACGCCGAGACCAAGAATGTGGACAAATGAAGTCTCTTGTAC
genomic: ACTGATTGATCAGATTAGCTTGCAACAAGGACGAATTGTGGCCCTAGAAGgtttgctttt ... attctttcagAAGAGCGGAAACGCCGAGACCAAGAATGTGGACAAATGAAGTCTCTTGTAC
EST: gi|298173640|gb|HO016976.1|HO016976
EST:     ACTGATTGATCAGATTAACTTGCAACAAGGACGAATTGTGGCCCTAGAAG                         AAGAGCGGAAACGCCGAGACCAAGAATGTGGACAAATGGAGTCTCTTGTAC
genomic: ACTGATTGATCAGATTAGCTTGCAACAAGGACGAATTGTGGCCCTAGAAGgtttgctttt ... attctttcagAAGAGCGGAAACGCCGAGACCAAGAATGTGGACAAATGAAGTCTCTTGTAC
EST: gi|298195373|gb|HO039204.1|HO039204
EST:     ACTGATTGATCAGATTAGCTTGCAACAAGGACGAATTGTGGCCCTAGAAG                         AAGAGCGGAAACGGCGAGACCAAGAATGTGGTCAAATGAAGTCTCTTGTAC
genomic: ACTGATTGATCAGATTAGCTTGCAACAAGGACGAATTGTGGCCCTAGAAGgtttgctttt ... attctttcagAAGAGCGGAAACGCCGAGACCAAGAATGTGGACAAATGAAGTCTCTTGTAC