1 5' 3' | 2 5' 3' | 3 5' 3' |
GGCAGGCGGTGGTGCACCAGTTGCTGTTGCAGCTGCCCCAGTTGCTGCTGCTGCTGGTGGTGCTGCTGCCGCAGCTCCAGCTGCTGAGGAGAAAAAGAAGgtaaccctctggtgaaattgttgttcctgctattgtttttgaatcctgccttgtggtagcttatatgtatctaatatggaaatctgcttgttgcaattctatag
species | Glycine max |
transcript | GLYMA03G42180.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTGGTGCTGCTGCCGCAGCTCCAGCTGCTGAGGAGAAAAAGAAG GAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGATEST: gi|23063891|gb|BU578656.1|BU578656
genomic: GTGGTGCTGCTGCCGCAGCTCCAGCTGCTGAGGAGAAAAAGAAGgtaaccctct ... aattctatagGAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGAT
EST: GGAGAAAAAGAAG GAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGATEST: gi|208169622|gb|GD967345.1|GD967345
genomic: GGAGAAAAAGAAGgtaaccctct ... aattctatagGAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGAT
EST: AGGAGAAAAAGAAG GAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGATEST: gi|18039230|gb|BM307524.1|BM307524
genomic: AGGAGAAAAAGAAGgtaaccctct ... aattctatagGAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGAT
EST: TGCTGCCGCAGCTCCAGCTGCTGAGGAGAAAAAGAAG GAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGATEST: gi|193667112|gb|FK612584.1|FK612584
genomic: TGCTGCCGCAGCTCCAGCTGCTGAGGAGAAAAAGAAGgtaaccctct ... aattctatagGAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGAT
EST: GGAGAAAAAGAAG GAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGATEST: gi|193585777|gb|FK541219.1|FK541219
genomic: GGAGAAAAAGAAGgtaaccctct ... aattctatagGAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGAT
EST: GCTCCAGCTGCTGAGGAGAAAAAGAAG GAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGAT
genomic: GCTCCAGCTGCTGAGGAGAAAAAGAAGgtaaccctct ... aattctatagGAAGAACCGGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCAGGCGGTGGTGCACCAGTTGCTGTTGCAGCTGCCCCAGTTGCTGCTGCTGCTGGTGGTGCTGCTGCCGCAGCTCCAGCTGCTGAGGAGAAAAAGAAGgtaaccctctggtgaaattgttgttcctgctattgtttttgaatcctgccttgtggtagcttatatgtatctaatatggaaatctgcttgttgcaattctatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG