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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATGCTGATAACAGCCAAGAAGAATTTGTGCGTGATCAGCTAAACAGAGGTCTGGTACCACTTGGAATTGACGTTCATTGTTTATCTGGTTTAATAAAGgtatatactaaattcttaattcttaatttatttttttctattatgcttgacttaacatatattagggttaattggaatctacttttatttttgcttaaca...

Basic information

species Glycine max
transcript GLYMA03G42090.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G42090.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G46710.1 (Arabidopsis thaliana), 5'ss of exon 3
TAATGCTGATAACAGCCAAGAAGAATTTGTGCGTGATCAGCTAAACAGAGGTCTGGTACCACTTGGAATTGACGTTCATTGTTTATCTGGTTTAATAAAGgtatatactaaattcttaattcttaatttatttttttctattatgcttgacttaacatatattagggttaattggaatctacttttatttttgcttaaca
 ||| | || ||| || |||||||   ||| |||   ||| | ||| | ||| ||||||||| ||||||||| |||||||| ||  | ||||||||||||||  | |    |     ||   |||| ||| ||| |  ||  ||  |    | || |  | ||   |||   ||   |  | |||    ||   |||   
AAATCCAGACAACGGCAAAGAAGAGCATGTCCGTAGACAGTTGAACTGTGGTGTGGTACCACGTGGAATTGATGTTCATTGCTTGGCGGGTTTAATAAAGgttgaaaaagga-----aagatttaaattagtttcta-taacattttaagttcaaaaggt-ttgatgtttgctgttgttgaatttcggattaaattag--