Sequence
atgc intronic sequence ATGC exonic sequenceATGTCTTTCAGTTGAATATACAGACAGAGTAGGAGAGGTTGCTAAAAAACATGGATTGAAGCTTCACATTGATGGAGCCCGAATATTTAATGCATCAGTTgtaagtaaattttgtttacttatgatttgattttgttcacaaaactttaagtaaaatcactgcaaatcaagaaaaatttgtgcctgaaaaatgcacctag...
Basic information
species | Glycine max |
transcript | GLYMA03G41120.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G41120.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G04520.2 (Arabidopsis thaliana), 5'ss of exon 3
ATGTCTTTCAGTTGAATATACAGACAGAGTAGGAGAGGTTGCTAAAAAACATGGATTGAAGCTTCACATTGATGGAGCCCGAATATTTAATGCATCAGTTgtaagtaaa------------ttttgtttacttatgatttgattttgttcacaaaactttaagtaaaatcactgcaaatcaagaaaaatttgtgcctgaaaaatgcacctag---
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ATGCCTTCCTATAGAATATATAGACAAAGTCGGAGAATTAGCCAAGAAACATGGTTTGAAGCTTCACATTGACGGAGCTAGGATTTTCAACGCTTCTGTGgttagtatacacataattcgttttcatttgcattttctctgatttcatttactcgtatacgtgtatggatgctttgaag-attatgagtgcatcttttcggtcttaattttgaag
upper sequence: GLYMA03G41120.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0036g00520.t01 (Vitis vinifera), 5'ss of exon 4
ATGTCTTTCAGTTGAATATACAGACAGAGTAGGAGAGGTTGCTAAAAAACATGGATTGAAGCTTCACATTGATGGAGCCCGAATATTTAATGCATCAGTTgtaagtaaa---ttttgtttacttatgatttgatt-ttgttcacaaaactttaagtaaaatcactgcaaatcaagaaaaatttgtgcctgaaaaatgcacctag
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ATGCCTTCCTGCAGAATATATAGACAGAGTTGGAGAGTTAGCCAAGAAACATGGGTTAAAGCTTCATATTGATGGAGCCCGTATTTTCAATGCATCAATTgtgagtaaaagctttactttatccagatgtttattgctatttatattgctc--aattatccaaatgggttctgagttcaatttctgtcttgtggctccaaat--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254333684|gb|GR848602.1|GR848602EST: ATGGATTGAAGCTTCACATTGATGGAGCCCGAATATTTAATGCATCAGTT GCACTAG-TGTCCCTGTGGATAGGCTTGTTCAAGCAGCTGATTCAGTATCG
genomic: ATGGATTGAAGCTTCACATTGATGGAGCCCGAATATTTAATGCATCAGTTgtaagtaaat ... aatcttacagGCACTAGGTGTCCCTGTGGATAGGCTTGTTCAAGCAGCTGATTCAGTATCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGTCTTTCAGTTGAATATACAGACAGAGTAGGAGAGGTTGCTAAAAAACATGGATTGAAGCTTCACATTGATGGAGCCCGAATATTTAATGCATCAGTTgtaagtaaattttgtttacttatgatttgattttgttcacaaaactttaagtaaaatcactgcaaatcaagaaaaatttgtgcctgaaaaatgcacctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaaa