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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGTTAGAAAATTTATAAAGGAATGTTGGAGAAAATGTGGATGTGACATGCAATGTGGGAATCGGATAGTGCAACGGGGCATAGCATGCAAATTGCAGgtaagcaattctctgaatactgttacaacgtagagcatatgcttgaatttttgtttggggtgctctaaattcagtttggaaagtaaactcagttttttggcatgtttggttatgaaaagtatgtttgcttggcgctaccaatgttagctgttgatgaatacattgtcatctttccttcttcag

Basic information

species Glycine max
transcript GLYMA03G41020.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G41020.1 (Glycine max), 5'ss of exon 3
lower sequence: 13113.m00156 (Oryza sativa), 5'ss of exon 3
TATGGTTAGAAAATTTATAAAGGAATGTTGGAGAAAATGTGGATGTGACATGCAATGTGGGAATCGGATAGTGCAACGGGGCATAGCATGCAAATTGCAGgtaagcaattctctgaatactgttacaacgtagagcatatgcttgaatttttgtttggggtgctctaaattcagtttggaaagtaaactcagttttttggcatgtttggttatgaaaagtatgtttgcttggcgctaccaatgttagctgttgatgaatacattgtcatctttccttcttcag
| | | ||| |||||||| |||||||| ||||| |||||||| ||| ||||||||||||| || ||  | || ||||| |||||  |||||||  |||||||||   |||   ||  |     |   |  | |    ||||||  | || |  || |  |||  | | |||    |      | |   |    ||  || ||  || |    |  |                                                                   
TCTTGCTAGGAAATTTATCAAGGAATGCTGGAGTAAATGTGGTTGTAACATGCAATGTGGTAACCGTGTGGTTCAACGTGGCATCACATGCAATCTGCAGgtaat--atttaatgcctttgacttgtat-tggtatttatgctatatttgtcattggcagtgtgc-agattatactaatgccgaatgtttgaattactgtca-attcgaacgtccag------------------------------------------------------------------

upper sequence: GLYMA03G41020.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G042442_T01 (Zea mays), 5'ss of exon 4
TATGGTTAGAAAATTTATAAAGGAATGTTGGAGAAAATGTGGATGTGACATGCAATGTGGGAATCGGATAGTGCAACGGGGCATAGCATGCAAATTGCAGgtaagcaattctctgaatactgttacaacgtagagcatatgcttgaatttttgtttggggtgctctaaattcagtttggaaagtaaactcagttttttggcatgtttggttatgaaaagtatgtttgcttggcgctaccaatgttagctgttgatgaatacattgtcatctttccttcttcag
| |  | |||||||| || || ||||| ||||| ||||||||||||| |||||| ||||| |||||  |  | || || || ||| ||||||||||||||||| |        | || |   || ||| |     ||| |   |   || |   | |  ||   | | |     ||   || ||  | | | ||  | |  ||| |    | | ||||                                                                 
TCTTATGAGAAAATTCATTAAAGAATGCTGGAGTAAATGTGGATGTGGCATGCAGTGTGGAAATCGTGTGATTCAGCGTGGTATAACATGCAAATTGCAGgtatgt-------ttaagagatttgcaatgc----catgtttct---ttctaaatggtagtaaccgagagcttatt---aatgtgcaat-atttgctggttatggtcttctctaaaaa-----------------------------------------------------------------

upper sequence: GLYMA03G41020.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G318803_T01 (Zea mays), 5'ss of exon 4
TATGGTTAGAAAATTTATAAAGGAATGTTGGAGAAAATGTGGATGTGACATGCAATGTGGGAATCGGATAGTGCAACGGGGCATAGCATGCAAATTGCAGgtaagcaattctctgaatactgttacaacgtagagcatatgcttgaatttttgtttggggtgctctaaattcagtttggaaagtaaactcagttttttggcatgtttggttatgaaaagtatgtttgcttggcgctaccaatgttagctgttgatgaatacattgtcatctttccttcttcag
||| || |||||||| || || ||||| ||||| ||||||||||||| |||||| ||||| || ||  |  | || || || ||| |||||||||| |||||| | ||      | ||    || ||| | |  ||   |   | ||| |||||      |    ||   | | | || ||  |   ||     || |||  |  |||   ||||                                                                    
TATTGTCAGAAAATTCATTAAAGAATGCTGGAGTAAATGTGGATGTGGCATGCAGTGTGGAAACCGTGTGATTCAGCGTGGTATAACATGCAAATTACAGgtatgtaag-----ggat----ttgcaatggaatgctcctttctaaatgtttgtcaccaatagctta---ttaatgtgcaatatttgctgg---ttctggttttattgaa-atgat-------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58024869|gb|CX711610.1|CX711610
EST:     TGCAATGTGGGAATCGGATAGTGCAACGGGGCATAGCATGCAAATTGCAG                         GTGTTTTCAACTCGTGAAGGAAAAGGCTGGGGCCTTAGAACGTTAGAAGAT
genomic: TGCAATGTGGGAATCGGATAGTGCAACGGGGCATAGCATGCAAATTGCAGgtaagcaatt ... ccttcttcagGTGTTTTCAACTCGTGAAGGAAAAGGCTGGGGCCTTAGAACGTTAGAAGAT
EST: gi|18734360|gb|BM528137.1|BM528137
EST:     TGCAATGTGGGAATCGGATAGTGCAACGGGGCATAGCATGCAAATTGCAG                         GTGTTTTCAACTCGTGAAGGAAAAGGCTGGGGCCTTAGAACGTTAGA
genomic: TGCAATGTGGGAATCGGATAGTGCAACGGGGCATAGCATGCAAATTGCAGgtaagcaatt ... ccttcttcagGTGTTTTCAACTCGTGAAGGAAAAGGCTGGGGCCTTAGAACGTTAGA
EST: gi|298176786|gb|HO023259.1|HO023259
EST:     TGCAATGTGGGAATCGGATAGTGCAACGGGGCATAGCATGCAAATTGCAG                         GTGTTTTTAACTCGTGAAGGAAAAGGCTGGGGCCTTAGAACGTTAGAAGAT
genomic: TGCAATGTGGGAATCGGATAGTGCAACGGGGCATAGCATGCAAATTGCAGgtaagcaatt ... ccttcttcagGTGTTTTCAACTCGTGAAGGAAAAGGCTGGGGCCTTAGAACGTTAGAAGAT