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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATATCTGTTATTAAGCATGCTTTCAGCCAAGGAATCACTTTTTTTGACACATCTGATCTCTATGGGCTCGACCATGCTAACGAATTTTTGCTCGGAAAAgtaaccattcctttgcatcctccccttaaattttaatcaagaaattatactaaaaaagttataacaagagttttatattttcatccaatcagaaatcttc...

Basic information

species Glycine max
transcript GLYMA03G40880.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15203192|gb|BI425960.1|BI425960
EST:     CATCTGATCTCTATGGGCTCGACCATGCTAACGAATTTTTGCTCGGAAAA                         GCTTTGAAGCAGTTACCTAGAGAAAAGATCCAGGTAGCCACGAAATTTGGC
genomic: CATCTGATCTCTATGGGCTCGACCATGCTAACGAATTTTTGCTCGGAAAAgtaaccattc ... tatggagcagGCTTTGAAGCAGTTACCTAGAGAAAAGATCCAGGTAGCCACGAAATTTGGC
EST: gi|22523340|gb|BU082151.1|BU082151
EST:     CATCTGATCTCTATGGGCTCGACCATGCTAACGAATTTTTGCTCGTAAAA                         GCTTTGAAGCAGTTACCTAGAGAAAAGATCCAGGTAGCCACGAAATTTGGC
genomic: CATCTGATCTCTATGGGCTCGACCATGCTAACGAATTTTTGCTCGGAAAAgtaaccattc ... tatggagcagGCTTTGAAGCAGTTACCTAGAGAAAAGATCCAGGTAGCCACGAAATTTGGC
EST: gi|18038680|gb|BM306974.1|BM306974
EST:     ATCTGATCTCTATGGGCTCGACCATGCTAACGAATTTTTGCTCGGAAAA                         GCTTTGAAGCAGTTACCTAGAGAAAAGATCCAGGTAGCCACGAAATTTGGC
genomic: ATCTGATCTCTATGGGCTCGACCATGCTAACGAATTTTTGCTCGGAAAAgtaaccattc ... tatggagcagGCTTTGAAGCAGTTACCTAGAGAAAAGATCCAGGTAGCCACGAAATTTGGC
EST: gi|254343581|gb|GR857337.1|GR857337
EST:     CATCTGATCTCTATGGGCTCGACCATGCTAACGAATTTTTGCTCGGAAAA                         GCTTTGAAGCAGTTACCTAGAGAAAAGATCCAGGTAGCCACGAAATTTGGC
genomic: CATCTGATCTCTATGGGCTCGACCATGCTAACGAATTTTTGCTCGGAAAAgtaaccattc ... tatggagcagGCTTTGAAGCAGTTACCTAGAGAAAAGATCCAGGTAGCCACGAAATTTGGC
EST: gi|19935403|gb|BQ080427.1|BQ080427
EST:     CATCTGATCTCTATGGGCTCGACCATGCTAACGAATTTTTGCTCGGAAAA                         GCTTTGAAGCAGTTACCTAGAGAAAAGATCCAGGTAGCCACGAAATTTGGC
genomic: CATCTGATCTCTATGGGCTCGACCATGCTAACGAATTTTTGCTCGGAAAAgtaaccattc ... tatggagcagGCTTTGAAGCAGTTACCTAGAGAAAAGATCCAGGTAGCCACGAAATTTGGC