1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCGCTCATGCTGCGAAACTAGCTTGAAACGTCTTGATGTTGAATACATTGATCTCTATTATCAGCATAGGGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatttcttcctctcaatgattttgatcatagtatgatgctattatctggcttatctcactagatactagatatattactaataaaaaagttaatttgttatataatag
species | Glycine max |
transcript | GLYMA03G40870.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATCTCTATTATCAGCATAGGGTGGACACATCTGTACCTATAGAGGAAACA GTGGGTGAACTTAAGEST: gi|8827996|gb|BE211726.1|BE211726
genomic: ATCTCTATTATCAGCATAGGGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... tatataatagGTGGGTGAACTTAAG
EST: ATCTCTATTATCAGCATAGGGTGGACACATCTGTACCTATAGAGGAAACA GTGGGTGAACTTAAGAAACTGGTGGAGGAGGGCAAAGTGAGGTATATAGGGEST: gi|151407626|gb|EV277441.1|EV277441
genomic: ATCTCTATTATCAGCATAGGGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... tatataatagGTGGGTGAACTTAAGAAACTGGTGGAGGAGGGCAAAGTGAGGTATATAGGG
EST: ATCTCTATTATCAGCATAGGGTGGACACATCTGTACCTATAGAGGAAACA GTGGGTGAACTTAAGAAACTGGTGGAGGAGGGCAAAGTGAGGTATATAGGGEST: gi|13251832|gb|BG362735.1|BG362735
genomic: ATCTCTATTATCAGCATAGGGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... tatataatagGTGGGTGAACTTAAGAAACTGGTGGAGGAGGGCAAAGTGAGGTATATAGGG
EST: ATCTCTATTATCAGCATAGGGTGGACACATCTGTACCTATAGAGGAAACA GTGGGTGAACTTAAGAAACTGGTGGAGGAGGGCAAAGTGAGGTATATAGGG
genomic: ATCTCTATTATCAGCATAGGGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... tatataatagGTGGGTGAACTTAAGAAACTGGTGGAGGAGGGCAAAGTGAGGTATATAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGCTCATGCTGCGAAACTAGCTTGAAACGTCTTGATGTTGAATACATTGATCTCTATTATCAGCATAGGGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatttcttcctctcaatgattttgatcatagtatgatgctattatctggcttatctcactagatactagatatattactaataaaaaagttaatttgttatataatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA