Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGATCATGCTGTGAAGCTAGCTTGAAGCGTCTTGATGTTGAATACATTGATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatttcttcctctcaatgattttgatcatagtagactttatatatatacctgtgaaaatttagtaatataatgatattatctggcttatctcactagatattagatatgttattaacgtttgttataatattatag

Basic information

species Glycine max
transcript GLYMA03G40860.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40860.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os10g28320.4 (Oryza sativa), 5'ss of exon 3
GCGATCATGCTGTGAAGCTAGCTTGAAGCGTCTTGATGTTGAATACATTGATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgt---taaggatttcttcctctcaatgattttgatcatagtagactttatatatatacctgtga--aaatttagtaatataatgatattatctggcttatctcactagatattagatatgttattaacgtttgttataatattatag
     ||||||||||||| ||| |  |||| |||| |||||| ||||||||||| || ||||||||  |  | |||   || ||||| ||||||||||| ||   || |      || || | |  ||  |||  | |  ||   |  ||   |  | || |||   | || |  | |   |  || |                                                           
----GCATGCTGTGAAGCAAGCCTTGAGCGCCTTGCTGTTGACTACATTGATCTGTACTATCAGCATCGCATTGACCAGTCAGTACCCATAGAGGAAACTGTGTgtatgagaacatttcttttacagaccttgtgctt--taccttgaatcccttaaactttgactgacttcatcagtgggaaaatgtag---------------------------------------------------------

upper sequence: GLYMA03G40860.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os10g28320.3 (Oryza sativa), 5'ss of exon 3
GCGATCATGCTGTGAAGCTAGCTTGAAGCGTCTTGATGTTGAATACATTGATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgt---taaggatttcttcctctcaatgattttgatcatagtagactttatatatatacctgtga--aaatttagtaatataatgatattatctggcttatctcactagatattagatatgttattaacgtttgttataatattatag
|||  ||||||||||||| ||| |  |||| |||| |||||| ||||||||||| || ||||||||  |  | |||   || ||||| ||||||||||| ||   || |      || || | |  ||  |||  | |  ||   |  ||   |  | || |||   | || |  | |   |  || |                                                           
GCGTGCATGCTGTGAAGCAAGCCTTGAGCGCCTTGCTGTTGACTACATTGATCTGTACTATCAGCATCGCATTGACCAGTCAGTACCCATAGAGGAAACTgtgtgtatgagaacatttcttttacagaccttgtgctt--taccttgaatcccttaaactttgactgacttcatcagtgggaaaatgtag---------------------------------------------------------

upper sequence: GLYMA03G40860.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0030g01960.t01 (Vitis vinifera), 5'ss of exon 3
GCGATCATGCTGTGAAGCTAGCTTGAAGCGTCTTGATGTTGAATACATTGATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt-tcttcctc------------tcaatgat--------tttgatcatagtagactttatatatatacctgtgaaaatttagtaatataatgatattatctggcttatctcactagatattagatatgttattaacgtttgttataatattatag---------------
|||  | ||||||||||||||||||||| |||||||||||||||| |||||  | |||||||||||  | ||||| ||||| |||||||||||||| || || |  |||| |||||||             |||||| |         |||| |||  |||   |||    ||  |   | |||||||   | | || |   | | | |   |  ||| | |     |  |||   ||   || | |   | | | | | ||                
GCGCACCTGCTGTGAAGCTAGCTTGAAGTGTCTTGATGTTGAATATATTGACTTGTATTATCAGCATTGTGTGGATACATCAGTACCTATAGAGGACACTgtaagtgattctcttcctggttaattacatgtcaatgctggtgatctcttgaacatgctaggtcttagtcttagtctacttaaaattttaaattttatttgaact-tatatttcttctaaatgagagtgggattcttttggaaggatgactttgaaactgtattttcttgtaatatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254328403|gb|GR835368.1|GR835368
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|213617996|gb|DB963629.1|DB963629
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|48575437|gb|CO036403.1|CO036403
EST:     GTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: GTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|213616562|gb|DB967198.1|DB967198
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|10847755|gb|BF070391.1|BF070391
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTATGAAATTGGACGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|209703783|gb|BW656888.1|BW656888
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|213592927|gb|DB966032.1|DB966032
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|254347025|gb|GR856695.1|GR856695
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|254327803|gb|GR834768.1|GR834768
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|209717396|gb|BW682385.1|BW682385
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|61241644|gb|DN591035.1|DN591035
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|151398527|gb|EV268398.1|EV268398
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|209706172|gb|BW680889.1|BW680889
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|10842861|gb|BF066210.1|BF066210
EST:     ATCTCTATTATCAGCACAAAATGGACACATCTGTACCTATAAAGGAAACA                         GGTGGGTGAACTTTAA-AAATTGGTC
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagG-TGGGTGAACTT-AAGAAATTGGTC
EST: gi|9259808|gb|BE347955.1|BE347955
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|209702300|gb|BW664256.1|BW664256
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|192325064|gb|FK016175.1|FK016175
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|9987127|gb|BE661235.1|BE661235
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|15663416|gb|BI700787.1|BI700787
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|213596943|gb|DB958095.1|DB958095
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|298186682|gb|HO037315.1|HO037315
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|5753669|gb|AI960956.1|AI960956
EST:     ATCTGTATTATCAGTACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|254337008|gb|GR843187.1|GR843187
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|16995650|gb|BM085022.1|BM085022
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|209703421|gb|BW678236.1|BW678236
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|192305622|gb|FG994332.1|FG994332
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|209699381|gb|BW664100.1|BW664100
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|15813849|gb|BI786124.1|BI786124
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|192294676|gb|FG986525.1|FG986525
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|254323788|gb|GR836127.1|GR836127
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|298180988|gb|HO022427.1|HO022427
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|192309505|gb|FK002869.1|FK002869
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTGAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|254347733|gb|GR853982.1|GR853982
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|213596960|gb|DB964139.1|DB964139
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|151394300|gb|EV264171.1|EV264171
EST:     ACCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|14011842|gb|BG726764.1|BG726764
EST:     CTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAATCTA                         TTGGGTGAACTTAAGAAATTTGTCTAAGAGGGTAAAGTCAAATATATTGG
genomic: CTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAA-C-Agttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGG
EST: gi|213587182|gb|DB955474.1|DB955474
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|213608458|gb|DB970887.1|DB970887
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|209712723|gb|BW681577.1|BW681577
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|19453671|gb|BM955081.1|BM955081
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|16996142|gb|BM085514.1|BM085514
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|254332024|gb|GR846227.1|GR846227
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|192306323|gb|FG995103.1|FG995103
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|7590075|gb|AW705836.1|AW705836
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAACAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|254320499|gb|GR826948.1|GR826948
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|192301004|gb|FG990104.1|FG990104
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
EST: gi|18040697|gb|BM308991.1|BM308991
EST:     ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACA                         GTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA
genomic: ATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatt ... aatattatagGTGGGTGAACTTAAGAAATTGGTCGAAGAGGGTAAAGTCAAATATATTGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGATCATGCTGTGAAGCTAGCTTGAAGCGTCTTGATGTTGAATACATTGATCTCTATTATCAGCACAGAGTGGACACATCTGTACCTATAGAGGAAACAgttaaggatttcttcctctcaatgattttgatcatagtagactttatatatatacctgtgaaaatttagtaatataatgatattatctggcttatctcactagatattagatatgttattaacgtttgttataatattatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA