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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatcttaattaacaaaaaagctattatcttaattaattaattaattaatgtgcattgaccgtgaggttgttattttttatttacag

Basic information

species Glycine max
transcript GLYMA03G40760.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40760.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G138268_T01 (Zea mays), 5'ss of exon 4
AATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagt-gatcttaattaacaaaaaagctattatcttaattaattaattaa---ttaatgtgcattgacc-gtgaggttgttattttttatttacag---------------
 |||||||| ||||||||||||||||| || || ||||||||||| || || || || || ||| ||| ||  |  || |  |  |    || ||   | |  ||  ||  |    ||   | | | | | | |   | |||||   | |  | |  |                
GATGTTCGTCGAATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGGgtgagttgacatatatgattattattattactaatctcaacaacaaaagagactttctagggtagtaagcagcccgtttgtttcatctggtctctatctctgaattttccag

upper sequence: GLYMA03G40760.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G138268_T02 (Zea mays), 5'ss of exon 3
--------------------------------------AATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagt-gatcttaattaacaaaaaagctattatcttaattaattaattaa---ttaatgtgcattgacc-gtgaggttgttattttttatttacag---------------
                                       |||||||| ||||||||||||||||| || || ||||||||||| || || || || || ||| ||| ||  |  || |  |  |    || ||   | |  ||  ||  |    ||   | | | | | | |   | |||||   | |  | |  |                
TAATCGGAAAATAATAATAATTTCCATTTCATTTTCAGGATGTTCGTCGAATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGGgtgagttgacatatatgattattattattactaatctcaacaacaaaagagactttctagggtagtaagcagcccgtttgtttcatctggtctctatctctgaattttccag

upper sequence: GLYMA03G40760.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0081g00010.t01 (Vitis vinifera), 5'ss of exon 4
AATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatcttaattaacaaaaaagctattatcttaattaattaattaattaatgtgcattgaccgtgagg--ttgttattttttatttacag--------------------
 |||||||| ||||| ||||||||| |||| |||||||||||||| ||||| ||||| || ||||||| || |  | |  |   ||    || ||| | ||   |||  |    ||| | ||       ||  |  ||  | | || ||||| |                      
GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGCCATCGGACTTGgttagtcatatatacttgctgcaac-tcatgatcattat-ggttatgttcaaaattttcaccacttttgctgacttaatctcttgtatttgcttgattaatcaatggcatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213593460|gb|DB977147.1|DB977147
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATAGGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
EST: gi|192299772|gb|FG993322.1|FG993322
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATTTGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
EST: gi|192305993|gb|FG993625.1|FG993625
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATTTGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
EST: gi|26060235|gb|CA803149.1|CA803149
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
EST: gi|254347844|gb|GR854093.1|GR854093
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
EST: gi|58019236|gb|CX705978.1|CX705978
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
EST: gi|151405406|gb|EV275220.1|EV275220
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAG-CAATCGGGCTAG                         CACCA-GAGCAGTGGAAA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAA
EST: gi|37994207|gb|CF805953.1|CF805953
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
EST: gi|37996072|gb|CF807661.1|CF807661
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
EST: gi|254337775|gb|GR845345.1|GR845345
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
EST: gi|192331445|gb|FK022721.1|FK022721
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATTTGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
EST: gi|26047583|gb|CA784317.1|CA784317
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
EST: gi|209708631|gb|BW678808.1|BW678808
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAGAGTCAAATTTGTA
EST: gi|207763941|gb|GD738834.1|GD738834
EST:     ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAG                         CACCAAGAGCAGTGGAAAA
genomic: ATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGgttagtgatc ... ttatttacagCACCAAGAGCAGTGGAAAA