1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGGAAGTGGAACTTGTGGGTTGTCCACAAGCTGTTGCTCACTGCTGTTTATGGCTTCATAATGTTTATATACCATTCCGGATGGAAAGAAACGTTGCCTGgtgagttaattgacgggattattacacgatgtttgtgattacctaatttcctcttctttcatgcag
species | Glycine max |
transcript | GLYMA03G40260.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGCTTCATAATGTTTATATACCATTCCGGATGGAAAGAAACGTTGCCTG CAAAAATTGCCTTTTACAAGTATGTTGCAATTATGTTCATTTTTAATGCGAEST: gi|31471794|gb|CD413822.1|CD413822
genomic: TGGCTTCATAATGTTTATATACCATTCCGGATGGAAAGAAACGTTGCCTGgtgagttaat ... tttcatgcagCAAAAATTGCCTTTTACAAGTATGTTGCAATTATGTTCATTTTTAATGCGA
EST: TGGCTTCATAATGTTTATATACCATTCCGGATGGAAAGAAACGTTGCCTG CAAAAATTGCCTTTTACAAGTATGTTGCAATTATGTTCATTTTTAATGCGAEST: gi|151408278|gb|EV278086.1|EV278086
genomic: TGGCTTCATAATGTTTATATACCATTCCGGATGGAAAGAAACGTTGCCTGgtgagttaat ... tttcatgcagCAAAAATTGCCTTTTACAAGTATGTTGCAATTATGTTCATTTTTAATGCGA
EST: TGGCTTCATAATGTTTATATACCATTCCGGATGGAAAGAAACGTTGCCTG CAAAAATTGCCTTTTACAAGTATGTTGCAATTATGTTCATTTTTAATGCGA
genomic: TGGCTTCATAATGTTTATATACCATTCCGGATGGAAAGAAACGTTGCCTGgtgagttaat ... tttcatgcagCAAAAATTGCCTTTTACAAGTATGTTGCAATTATGTTCATTTTTAATGCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGAAGTGGAACTTGTGGGTTGTCCACAAGCTGTTGCTCACTGCTGTTTATGGCTTCATAATGTTTATATACCATTCCGGATGGAAAGAAACGTTGCCTGgtgagttaattgacgggattattacacgatgtttgtgattacctaatttcctcttctttcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA