1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGTTGTTGCAGAATTGATGTACTTGCAGTATATGGATCCTAAAGAGCCGATTTTTATTTACATAAATTCCACTGGGACTACGCGAGATGATGGTGAAACGgtaattggcttctggcttactgtttatatgaaaatttttatttgctgtggtcactttattttgcattttttatatctgtagtttaagataatctatgaattaagctgcctctctgcctttgtcctttgttatcctcatgccttttgagttcttgcattcag
species | Glycine max |
transcript | GLYMA03G39570.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCGAGATGATGGTGAAACG GTAGGCATGGAGACTGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTGEST: gi|192293965|gb|FG987134.1|FG987134
genomic: GCGAGATGATGGTGAAACGgtaattggct ... ttgcattcagGTAGGCATGGAGACTGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTG
EST: TTTTTATTTACATAAATTCCACTGGGACTACGCGAGATGATGGTGAAACG GTAGGCATGGAGACTGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTGEST: gi|209702632|gb|BW660629.1|BW660629
genomic: TTTTTATTTACATAAATTCCACTGGGACTACGCGAGATGATGGTGAAACGgtaattggct ... ttgcattcagGTAGGCATGGAGACTGAAGGTTTTGCCATTTATGATGCAATGATGCAGTTG
EST: TTTTTATTTACATAAATTCCACTGGGACTACGCGAGATGATGGTGAAACG GTAGGCATGGAGACTGAAGGTTTTGCCATTTAEST: gi|7478792|gb|AW666408.1|AW666408
genomic: TTTTTATTTACATAAATTCCACTGGGACTACGCGAGATGATGGTGAAACGgtaattggct ... ttgcattcagGTAGGCATGGAGACTGAAGGTTTTGCCATTTA
EST: TTTTTATTTACATAAATTCCACTGGGACTACGCGAGATGATGGTGAAACG GTAGGCATGGAGACTGAA
genomic: TTTTTATTTACATAAATTCCACTGGGACTACGCGAGATGATGGTGAAACGgtaattggct ... ttgcattcagGTAGGCATGGAGACTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGTTGCAGAATTGATGTACTTGCAGTATATGGATCCTAAAGAGCCGATTTTTATTTACATAAATTCCACTGGGACTACGCGAGATGATGGTGAAACGgtaattggcttctggcttactgtttatatgaaaatttttatttgctgtggtcactttattttgcattttttatatctgtagtttaagataatctatgaattaagctgcctctctgcctttgtcctttgttatcctcatgccttttgagttcttgcattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG