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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACTTTATTCACAAGAGGTAAAGCGCCTGTCACTCAACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaattgtaaatgtgaacaactaaaaattggactaaccttcttgcaatccatgatgtgaatgcatggcttttcatctttgttactcttatacccggaacatttacttagtgtagtatttttaatttcccag

Basic information

species Glycine max
transcript GLYMA03G38930.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G38930.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0060g00820.t01 (Vitis vinifera), 5'ss of exon 3
GTGACTTTATTCACAAGAGGTAAAGCGCCTGTCACTCAACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaattgtaaatgtgaacaactaaaaattggactaaccttcttgcaatccatgatgtgaatgcatgg-cttttcatctttgttactcttatacccggaacatttacttagtgtagt-atttttaatttcccag----
|||||| | || || ||||| |||||  |  |||| |||||||||||||||||||||||||  ||||||||||| ||||||||||||||||    ||| |  |  |   | ||   || |   |||  ||||| | |      | ||  | || |||   || || |    ||     | | | ||  |  |||  |  | || |  | ||||||  ||||   |    
GTGACTCTGTTTACTAGAGGAAAAGCAGCCATCACCCAACAGTTGCCAGGTGAATCAGACAAGGATTATGCTGAATTTTCTTCCAAGgtat----attatgtaccttgtctacatgaattctcact--ccttcatccccggtttcattagtattcattctctcttgaggaatgaccagcatgttccaagtgcatgaaagttgtttcttgattttttttttctttggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192321048|gb|FK012416.1|FK012416
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|120534298|gb|EH262431.1|EH262431
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|120534123|gb|EH262256.1|EH262256
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|120534506|gb|EH262639.1|EH262639
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|209697177|gb|BW672942.1|BW672942
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|10232858|gb|BE801746.1|BE801746
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|213606521|gb|DB971317.1|DB971317
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|19271086|gb|BM887342.1|BM887342
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|120496123|gb|EH224290.1|EH224290
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|213608598|gb|DB967101.1|DB967101
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|120531123|gb|EH259256.1|EH259256
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|213617909|gb|DB967299.1|DB967299
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|15287169|gb|BI471060.1|BI471060
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAAGAGACAGGAAAGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|209708025|gb|BW657080.1|BW657080
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|17518618|gb|BM187660.1|BM187660
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|213589761|gb|DB955456.1|DB955456
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|13562783|gb|BG551003.1|BG551003
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|209721697|gb|BW682538.1|BW682538
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|209701640|gb|BW673126.1|BW673126
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|213598124|gb|DB964155.1|DB964155
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|6667229|gb|AW278688.1|AW278688
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGAC
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGAC
EST: gi|209715536|gb|BW682189.1|BW682189
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|213602138|gb|DB962631.1|DB962631
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|151403281|gb|EV273091.1|EV273091
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|213594012|gb|DB961928.1|DB961928
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|120531139|gb|EH259272.1|EH259272
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|120530457|gb|EH258590.1|EH258590
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|15199948|gb|BI424091.1|BI424091
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|209723821|gb|BW682958.1|BW682958
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|209709384|gb|BW668340.1|BW668340
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|213601152|gb|DB964659.1|DB964659
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|209709945|gb|BW676517.1|BW676517
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|213614000|gb|DB960965.1|DB960965
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|209728486|gb|BW663478.1|BW663478
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|209718791|gb|BW671992.1|BW671992
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|13252610|gb|BG363513.1|BG363513
EST:     GCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: GCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|11413480|gb|BF425491.1|BF425491
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|11413168|gb|BF425179.1|BF425179
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|213607233|gb|DB965119.1|DB965119
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|10232367|gb|BE801255.1|BE801255
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|20811439|gb|BQ295917.1|BQ295917
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|209715908|gb|BW650921.1|BW650921
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|6134475|gb|AW132868.1|AW132868
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|5058545|gb|AI737021.1|AI737021
EST:     GCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: GCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|213589232|gb|DB957764.1|DB957764
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
EST: gi|209721137|gb|BW665694.1|BW665694
EST:     AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAG                         ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT
genomic: AACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaat ... aatttcccagATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGACTTTATTCACAAGAGGTAAAGCGCCTGTCACTCAACAGTTGCCAGGTGAATCAGACAGTGATTATGCTGATTTTTCTTCCAAGgtatgctaattgtaaatgtgaacaactaaaaattggactaaccttcttgcaatccatgatgtgaatgcatggcttttcatctttgttactcttatacccggaacatttacttagtgtagtatttttaatttcccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT