1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CGACCAAGAGTTTTATCTGTCTATTGTTTCTGAAAGGCTTGGCTCCACTATCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAGgtgttattgaatcatgttactcttactgttttatttgctctgccttgtttgctgccgtatttatgcttcgtttctgcttgttactgttaattatcag
species | Glycine max |
transcript | GLYMA03G38810.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAG GTCAAAACTATACTCCTTCCGACGGAAAAACCATTGACTCCGGAGGCATGTEST: gi|7588547|gb|AW704270.1|AW704270
genomic: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAGgtgttattga ... taattatcagGTCAAAACTATATTCCTTCCGACGGAAAAACCATTGACTCCGGAGGCATGT
EST: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGTGATAAG GTCACAACTATATTCCTTCCGACGGAAAAACCATTGACTCCGGAGGCATGTEST: gi|213596238|gb|DB960170.1|DB960170
genomic: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAGgtgttattga ... taattatcagGTCAAAACTATATTCCTTCCGACGGAAAAACCATTGACTCCGGAGGCATGT
EST: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAG GTCAAAACTATATTCCTTCCGACGGAAAAACCATTGACTCCGGAGGCATGTEST: gi|298186643|gb|HO037276.1|HO037276
genomic: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAGgtgttattga ... taattatcagGTCAAAACTATATTCCTTCCGACGGAAAAACCATTGACTCCGGAGGCATGT
EST: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAG GTCAAAACTATACTCCTTCCGACGGAAAAACCATTGACTCCEST: gi|298181603|gb|HO025778.1|HO025778
genomic: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAGgtgttattga ... taattatcagGTCAAAACTATATTCCTTCCGACGGAAAAACCATTGACTCC
EST: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAG GTCAAAACTATATTCCTTCCGAEST: gi|151395479|gb|EV265356.1|EV265356
genomic: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAGgtgttattga ... taattatcagGTCAAAACTATATTCCTTCCGA
EST: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAG GTCAAAACTATATTCCTTCCGACGGAAAAACCATTGACTCCGGAGGCATGTEST: gi|10846293|gb|BF069216.1|BF069216
genomic: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAGgtgttattga ... taattatcagGTCAAAACTATATTCCTTCCGACGGAAAAACCATTGACTCCGGAGGCATGT
EST: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAGG GTCAAAACTATATTCCTTCCGACGGAAAAACCATTGACTCCGGAGGCATGTEST: gi|298186900|gb|HO033999.1|HO033999
genomic: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAGgtgttattga ... taattatcagGTCAAAACTATATTCCTTCCGACGGAAAAACCATTGACTCCGGAGGCATGT
EST: TCAGCTTCTCCGAGTGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAG GTCAAAACTATATTCCTTCCGACGGAAAAACCATTGACTCCGGAGGCATGTEST: gi|120495312|gb|EH223479.1|EH223479
genomic: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAGgtgttattga ... taattatcagGTCAAAACTATATTCCTTCCGACGGAAAAACCATTGACTCCGGAGGCATGT
EST: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAG GTCAAAACTATATTCCTTCCGACGGAAAAACCATTGACTCCGGAGGCATGTEST: gi|208082005|gb|GD879507.1|GD879507
genomic: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAGgtgttattga ... taattatcagGTCAAAACTATATTCCTTCCGACGGAAAAACCATTGACTCCGGAGGCATGT
EST: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAG GTCAAAACTATATTCCTTCCGACGGAAAAACCATTGACTCCGGAGGCATAGEST: gi|37997687|gb|CF809276.1|CF809276
genomic: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAGgtgttattga ... taattatcagGTCAAAACTATATTCCTTCCGACGGAAAAACCATTGACTCCGGAGGCAT-G
EST: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAG GTCAAAACTATATTCCTTCCGACGGAAAAACCATTGACTCCGGAGGCATGTEST: gi|151407958|gb|EV277773.1|EV277773
genomic: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAGgtgttattga ... taattatcagGTCAAAACTATATTCCTTCCGACGGAAAAACCATTGACTCCGGAGGCATGT
EST: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAG GTCAAAACTATATTCCTTCCGACGGAAAAACCATTGACTCCGGAGGCATGTEST: gi|15202616|gb|BI425495.1|BI425495
genomic: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAGgtgttattga ... taattatcagGTCAAAACTATATTCCTTCCGACGGAAAAACCATTGACTCCGGAGGCATGT
EST: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAG GTCAAAACTATATTCCTTCCGACGGAAAAACCATTGACTCCGGAGGCATGT
genomic: TCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAGgtgttattga ... taattatcagGTCAAAACTATATTCCTTCCGACGGAAAAACCATTGACTCCGGAGGCATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACCAAGAGTTTTATCTGTCTATTGTTTCTGAAAGGCTTGGCTCCACTATCAGCTTCTCCGAATGTGGCGGCATTGAAATTGAAGAGAATTGGGATAAGgtgttattgaatcatgttactcttactgttttatttgctctgccttgtttgctgccgtatttatgcttcgtttctgcttgttactgttaattatcag
- - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA