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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAGCTTCAAACTGTGGATGGACTGGTAAAGGATAGAACACAATGTGCTCCCAATGGATACTATTTTATTCCAGTATATGACAAGgtaaaacttacttgaatttgtgcacatttaagtatatttgggcaacttctgtctacataaatacagaatgacatatatatgccttagatgtgagttattattcagtttttctcaatgcaattattttcattacag

Basic information

species Glycine max
transcript GLYMA03G37930.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G37930.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g19470.1 (Oryza sativa), 5'ss of exon 3
GTTGAGCTTCAAACTGTGGATGGACTGGTAAAGGATAGAACACAATGTGCTCCCAATGGATACTATTTTATTCCAGTATATGACAAGgta--aaacttac--------ttgaatttgtgc----acatttaagtatatttgggcaacttctgtctacataaatacagaatgacatatatatg-cctta--gatgtgagttattattcagtttttctcaatgcaa--ttattttcattacag---------------------
||||||||    ||| | |||||  |||| ||||| || || || ||||| || ||||||||||||||||| ||||| ||||||||||||   | |||          || | |||| |      | || |   ||  |  || |||||| ||  |  |||  |   ||  | |  || ||| |||||    | |||     |  ||||  ||     ||| ||  | || |||  | |                       
GTTGAGCTGTGTACTATTGATGGTTTGGTTAAGGAAAGCACTCAGTGTGCCCCTAATGGATACTATTTTATCCCAGTCTATGACAAGgtattgatcttgtgcttagcatttattttgggttttggccttgataaatgctctggaaacttccgtaaaattaagaaagaaaacataactagatgaccttattactctgacaagattctcagcattatcatatggaagataatattctgttctttttgttgttttcacgccacag

upper sequence: GLYMA03G37930.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G014788_T01 (Zea mays), 5'ss of exon 3
GTTGAGCTTCAAACTGTGGATGGACTGGTAAAGGATAGAACACAATGTGCTCCCAATGGATACTATTTTATTCCAGTATATGACAAGgtaaaacttacttgaatttgtgcacatttaagtatatttgggcaacttctgtctacataaatacagaatgacatatatatgccttagatgtgagttattattcagtttttctcaatgcaattattttcattacag
||||||||    ||||| |||||  |||| || || || ||||| |||||||| ||||||||||||||||| || || ||||| ||||||    |   |    ||| ||   | || |||   | |||   |  | | | |   |    |    ||   | | |||    ||   ||  |||        || ||                           
GTTGAGCTCTGCACTGTTGATGGTTTGGTTAAAGAAAGCACACAGTGTGCTCCTAATGGATACTATTTTATCCCCGTCTATGATAAGgta----tctttgtgttttttgtttactttagt---tctggattatcttt-tatgtgttctcattttatt-tacacatacaattttattgcaagtaggagcaaaggtta--------------------------

upper sequence: GLYMA03G37930.2 (Glycine max), 5'ss of exon 3
lower sequence: AT3G62360.1 (Arabidopsis thaliana), 5'ss of exon 3
GTTGAGCTTCAAACTGTGGATGGACTGGTAAAGGATAGAACACAATGTGCTCCCAATGGATACTATTTTATTCCAGTATATGACAAGgtaaaacttacttgaatttgtgcacatttaagtatatttgggcaacttctgtctacataaatacagaatgacatatatatgccttagatgtgagttattattcagtttttctcaatgcaattattttcattacag
|||||||||||||| || |||||| ||||||| || || ||||| ||||| || ||||| |||||||| || ||||||||||||||||||    | |       |  | | | |||  |       ||  ||    ||| | |||  || | | | |  || | ||||| ||      |                                           
GTTGAGCTTCAAACAGTAGATGGATTGGTAAAAGACAGTACACAGTGTGCCCCAAATGGTTACTATTTCATCCCAGTATATGACAAGgta---ttca-------tcatacccttttcgg-------ggttaatcggtgt-tgcatttattctgcaagtgatttctatgctttcttctcgtag----------------------------------------

upper sequence: GLYMA03G37930.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0005g01650.t01 (Vitis vinifera), 5'ss of exon 3
GTTGAGCTTCAAACTGTGGATGGACTGGTAAAGGATAGAACACAATGTGCTCCCAATGGATACTATTTTATTCCAGTATATGACAAGgtaaaacttacttgaatttgtgcacatttaagtatatttgggcaacttctgtctacataaatacagaatgacatatatatgccttagatgtgagttattattcagtttttctcaatgcaattattttcattacag
||||||||||  ||  | |||||| |||| ||||| ||||| || ||||| || ||||| |||||||| ||||| || ||||||||||||     |  || ||       ||| |  ||| |  ||       |||||  |  || | || | ||||   ||  |    || |    | | | |   |||| |      ||| | | | |            
GTTGAGCTTCGCACAATTGATGGATTGGTGAAGGACAGAACTCAGTGTGCCCCAAATGGTTACTATTTCATTCCTGTCTATGACAAGgta-----tttttaaa-------acaat--agtgtggttca-----ttctgcatgaatgagtagaaaatg---tagttgcctctcatcaataactaacatttcaatcaaa--caaagaagtaaa-----------

upper sequence: GLYMA03G37930.2 (Glycine max), 5'ss of exon 3
lower sequence: PP1S269_44V6.1 (Physcomitrella patens), 5'ss of exon 4
GTTGAGCTTCAAACTGTGGATGGACTGGTAAAGGATAGAACACAATGTGCTCCCAATGGATACTATTTTATTCCAGTATATGACAAGgtaaaacttacttgaatttgtgca-catttaagtatat-ttgggcaacttctgtctacataaatacagaatgacatatatatgccttagatgtgagttattattcagtttttctca--atgcaattattttca-ttacag------------------------------------------
|| ||||| |  ||  | || ||||| || |||||||| || |||||||| || ||||| ||||||||| | ||||| ||||||||||||    || |  ||  |||| |  |||    || | |  ||  | | ||   ||    |    | | || |   | | | | | ||          |  |||  | | ||        || ||||| || || || |||                                          
GTAGAGCTCCGGACATTAGACGGACTTGTGAAGGATAGCACTCAATGTGCCCCTAATGGGTACTATTTTGTACCAGTTTATGACAAGgtatgctttgcaagatcttgtccttcatcattgtttttactgtaccattttcatccttgttttcataaaa-gttttttcttttctttttccccacaatgctatagaatattctatgtggtgaaattagttacaattccagagctatccatgagtacaataactacattccgtgatattgcag