Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATAATACGTTGTGGGGGAGCCGTAGATGATGATATGTCTAACATCTTAGTCGCCCAGCTTCTTTACCTTGATGTCCTAACAAGgtttgttcttcgtttttagttgttaaaaactcgcggtttatcttcttataaagtagtcccgttgaggatggcattcgaattcaatacttatattttggtt...

Basic information

species Glycine max
transcript GLYMA03G37880.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G37880.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0005g01530.t01 (Vitis vinifera), 5'ss of exon 4
AGAATAATACGTTGTGGGGGAGCCGTAGATGATGATATGTCTAACATCTTAGTCGCCCAGCTTCTTTACCTTGATG-------TCCTAACAAGgtttgttcttcgtttttagttgttaaaaactcgcggtttatcttcttataaagtagtcccgttgaggatggcattcgaattcaatacttatattttggtt-----
|||||||| || ||||| ||||| || |||||||||||| | |||||| |||| || |||||||| || |||||||       |||| |||||||  ||        || || |||| |          | | | |   |  ||| |   ||  ||    ||  |  |     | |  | ||||       |      
AGAATAATCCGATGTGGTGGAGCTGTTGATGATGATATGGCAAACATCATAGTGGCTCAGCTTCTCTATCTTGATGCTGTTGATCCTGACAAGgtccgtatggtagctt-agctgttgatgttct----tatttttgtatgcaaattttccctctttgttattactattattattacgatttatcacaaaatgaacat