Sequence
atgc intronic sequence ATGC exonic sequenceTAATGCTGAAAATGGTCAAGAGGAGTTTGTGAGGGAACAATTAAACAGAGGCATAGTACCAGATGGCATTGATGTGCACTGCTTAGCAGGTCTCATAAAGgtattactatttttttccttttcaaaatcactctcccttttttttctccctatataatttgagatttatttggtcttggattgttggattcctatttgaa...
Basic information
species | Glycine max |
transcript | GLYMA03G35480.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G35480.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G113073_T01 (Zea mays), 5'ss of exon 3
TAATGCTGAAAATGGTCAAGAGGAGTTTGTGAGGGAACAATTAAACAGAGGCATAGTACCAGATGGCATTGATGTGCACTGCTTAGCAGGTCTCATAAAGgtattactatttttttccttttcaaaatcactctcccttttttttctccctatataatttgagatttatttggtcttggattgttggattcctatttgaa-
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AAATGCAGAAAATAGCCAGGAAGAGTTTGTGAGAGACCAACTAAATAGTGGAATTGTTCCAGATGGCATTGATGTCCACTGTTTGGCAGGTCTAATTAAAgtaa-gctaatttctttcatgtagcttatacaatcataatcattctattggaagcatctttttcttaatcacctgtttagtaattagagagttattaaatg
upper sequence: GLYMA03G35480.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G11490.1 (Arabidopsis thaliana), 5'ss of exon 3
TAATGCTGAAAATGGTCAAGAGGAGTTTGTGAGGGAACAATTAAACAGAGGCATAGTACCAGATGGCATTGATGTGCACTGCTTAGCAGGTCTCATAAAGgtattactatttttttccttttcaaa-atcactctcccttttttttctccctatataatttgagatttatttggtcttggattgttggattcctatttgaa
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TAATGGTGAGAATGGTCAAGAAGAGTACATAAGAGAAGAGTTGAATAAAGGTATTATACCTGATAACATTGATGTCCACTGCTTAGCAAGTCTCATTAAGgtaaaa--acccataaactccacaaggatcttattgtttcctttcccttctttcaccctttttgaatttgtggatttt---ttcttggtttatcctctag-
upper sequence: GLYMA03G35480.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g03140.t01 (Vitis vinifera), 5'ss of exon 3
TAATGCTGAAAATGGTCAAGAGGAGTTTGTGAGGGAACAATTAAACAGAGGCATAGTACCAGATGGCATTGATGTGCACTGCTTAGCAGGTCTCATAAAGgtat-tactatttttttccttttcaaaatcactctcccttttttttctccctatataatttga--gatttatttggtcttggattgttggattcctatttgaa
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TAATGCTGAGAATGGCCAAGAGGAGTATGTTAGAGACCAGTTAAACAGGGGAGTAGTCCCAGATGACATTGATGTGCACTGCTTAGCAGGCCTTATAAAGgtatgtttcattcatttggttatttactgcagaatcaggaacttggtagcct-tgtggctccattggattacctaccaagtaccacttacaagtgtgtttc--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22521721|gb|BU080532.1|BU080532EST: GCATAGTACCAGATGGCATTGATGTGCACTGCTTAGCAGGTCTCATAAAG GCTTGGTTTAGAGAACTACCAACTGGGGTATTGGACCCTCTTTCGCCAGAG
genomic: GCATAGTACCAGATGGCATTGATGTGCACTGCTTAGCAGGTCTCATAAAGgtattactat ... tccttcatagGCTTGGTTTAGAGAACTACCAACTGGGGTATTGGACCCTCTTTCGCCAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAATGCTGAAAATGGTCAAGAGGAGTTTGTGAGGGAACAATTAAACAGAGGCATAGTACCAGATGGCATTGATGTGCACTGCTTAGCAGGTCTCATAAAGgtattactatttttttccttttcaaaatcactctcccttttttttctccctatataatttgagatttatttggtcttggattgttggattcctatttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctccc