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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCAAGTAGGgtaggtgaaccattgcatcaaaacttgtccctttaaggtttgaaatgatggattttggtaggaatcagtctagattcgacactgttacagaattttttgt...

Basic information

species Glycine max
transcript GLYMA03G34910.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34910.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G36480.3 (Arabidopsis thaliana), 5'ss of exon 2
TGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCAAGTAGGgtaggtgaaccattgcatcaaaact-tgtccctttaaggtttgaaatgatggattttggtaggaatcagt----ctagattcgacactgttacagaattttttgt
  | |||| |||   |||   ||| || || |||||||| ||||| ||||||||||||||||||||| ||||||||||||| |||||||||||  |  ||||| |  ||  |    |  |||  |    ||  | || |||   | |||||        ||    ||||     |||||     | |||||  |    ||     
ATCCACAGCCAGAGCTGAGCCGCAATCTCAGCGCCCACCACATAGCATCCATGTGAATCCCAAGTATCTAGAAAGGCAGCGCCTTCAGCAGTCGGGACGGgtaagc-aatgaccaaagtaaacttgcagccactgaaagttattagtgatgatacaccctaaccttcagctctactagagatttcgctgttctaagtgttc----

upper sequence: GLYMA03G34910.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g03880.t01 (Vitis vinifera), 5'ss of exon 3
TGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAA---GGCAGCGTCTTCAGCAGTCAAGTAGGgtaggtgaaccattgcatcaaaacttgtccct-ttaag--gtttgaaatgatggattttggtaggaatcagtctagattcgacactg--ttacagaattttttgt
    |||   |||  |||||  ||||||||||| ||||| || ||||| ||||| ||||| |||||||||||     |||| |||||||||||||| || |||||  ||||    || ||            | | || ||   | | |   | ||     || |||  ||||    |||    | |  |  |  ||||  |      
---AACATCTAGGTCTGATTCTCAGTCACAACGGCCACCACACAGTATTCATGTAAATCCAAAGTATTTAGAGGCACGGCAACGTCTTCAGCAGTCGAGCAGGgtgagtgatgatttacaatggtgtagaatcatattgagcaatattagtggctgagcagtgttagctatcaaaaaagaaaaaaaaaagggtggcagagctg-----