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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAATgtaagtttcatttctttactctaatttctagtgatttattaccttggaactggtattttttttttggaaggcgaagataatatattatatatgaaaccaa...

Basic information

species Glycine max
transcript GLYMA03G34540.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34540.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G53120.1 (Arabidopsis thaliana), 5'ss of exon 3
TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAATgtaagtttcatttctttactctaatttctagtgatttattaccttggaactggtattttttttttggaaggcgaagataatata-ttatatat-gaaaccaa
 || |||||  |  |||||||| | |||||||||||||||||||| || ||| |||  || ||||| ||||||||  | || |||||||||||| ||         |  |  ||||| |  |  ||  |   |   |||  || || |  |    |    | || |    || |||| | | || |  | 
CGTGGATGAACTCAGGAAGCTTCTCTCTGACAAAGATGCGTATCAGCAATTTCTGCTCTCTCTTGACCAGGTCAAAGTCCAGAATAATgtaagtctctaaaacagtcagttgtttctggatagctaagag--tattactattaattgtagtcctaagaatggagcttcgttagttatgtgttgatattat

upper sequence: GLYMA03G34540.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G36680.1 (Arabidopsis thaliana), 5'ss of exon 3
TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAATgtaagttt----catttctttac-----tctaatttctagtgatttattaccttggaactggtattttttttttggaaggcgaagataata--tattatatatgaaaccaa---
||| |||||| |  |||||||| | |||||||| |||||||||||||||||| |||| |||||||| |||||||  |||||||| |||||||||      |||    | |      |||| | |||   ||  | |  | |    | |  |    |||||  |       |   |  |   | || | |||     ||    
TGTGGATGAGCTTAGGAAGCTTCTCTCTGACAAGGATGCGTATCAACAGTTTCTGCACTCGCTTGACCAGGTCACTATTCAAAACAATgtaagtgggaaacatgatgtaaaaatcatctattgtcttaagaaatgtagcttcttcattatttacgtttttgagatgattcagttttgtgctttttctttatatgttcattag

upper sequence: GLYMA03G34540.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g04470.t01 (Vitis vinifera), 5'ss of exon 3
TGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAATgtaagtttca--------tttctttactctaatttctagtgat-ttattaccttggaactggtattttttttttggaaggcgaagataatatattatatatgaaaccaa
  | |||||||| || ||||||||||||||||| ||||| ||  | || || || | ||| |||||||| || || |||||||| |||||||||||          |||||    ||||  |||   | || ||||||| || ||| |  |          | |    | |  | ||   |   || ||        
CATCGATGAGTTACGAAAGCTTTTATCTGACAAGGATGCATACAACCAATTGTTACTTTCACTTGATCAAGTTAAAATTCAAAACAATgtaagtttggaatgttgttttctgccatctacattcacctaatcttattactttagaattcttgcaaaccaccttgctttctat-acaactcagcttacat--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37997616|gb|CF809205.1|CF809205
EST:     CGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAAT                         CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
genomic: CGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAATgtaagtttca ... gacttgtcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
EST: gi|58015690|gb|CX702432.1|CX702432
EST:     AGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAAT                         CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
genomic: AGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAATgtaagtttca ... gacttgtcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
EST: gi|213610992|gb|DB970919.1|DB970919
EST:     CGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAAT                         CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
genomic: CGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAATgtaagtttca ... gacttgtcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
EST: gi|10848192|gb|BF070735.1|BF070735
EST:     CGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAAT                         CTGAAAGATGAACTTTGCACGGAGAATTTACAGCTTGCAG
genomic: CGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAATgtaagtttca ... gacttgtcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
EST: gi|151395409|gb|EV265286.1|EV265286
EST:     CGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAAT                         CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
genomic: CGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAATgtaagtttca ... gacttgtcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
EST: gi|5678132|gb|AI939262.1|AI939262
EST:     CGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAAT                         CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
genomic: CGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAATgtaagtttca ... gacttgtcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
EST: gi|298167079|gb|HO010518.1|HO010518
EST:     CGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAAT                         CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
genomic: CGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAATgtaagtttca ... gacttgtcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
EST: gi|254348136|gb|GR851815.1|GR851815
EST:     CGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAAT                         CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
genomic: CGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAATgtaagtttca ... gacttgtcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
EST: gi|27427318|gb|CA938838.1|CA938838
EST:     CGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAAT                         CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
genomic: CGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAATgtaagtttca ... gacttgtcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
EST: gi|192328158|gb|FK020419.1|FK020419
EST:     CGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAAT                         CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG
genomic: CGTATCAACAGTTTTTGCATTCGCTTGATCAGGTCAAGATTCAAAATAATgtaagtttca ... gacttgtcagCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG