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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTATTGTTTTGAAGATCGAGGCAATCGCCGTGTTGCATTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATCCAGAAAGGgtaaaattcatttttatgcatattttagattttcctatatttacagttttgatgtaaagtctatgtctaatagttaaactttaatctacataagataattcttttgtatgtgaatgccaaattctcattttcatgtctgttctttaatttttag

Basic information

species Glycine max
transcript GLYMA03G34050.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34050.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G03406.1 (Arabidopsis thaliana), 5'ss of exon 3
CTTTATTGTTTTGAAGATCGAGGCAATCGCCGTGTTGCATTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATCCAGAAAGGgtaa--aattca----tttttatgcatattttagattttcctatatttacagttttgatgtaaagtctatgtctaatagttaaactttaatctacataagataattcttttgtatgtgaatgccaaattctcattttcatgtctgttctttaatttttag
||||| || ||||||||| | || ||||||||||| |||||||||||||| ||||| |||||||| || ||||| || || ||||||||||||  ||| ||    ||| | |  |   || ||| ||  |  ||||      ||  |||    || ||| | |  | |||       | |||  || || |||        | || |||||   | ||| ||| ||| | |  || |            
CTTTACTGCTTTGAAGATAGGGGTAATCGCCGTGTAGCATTGAGGCCTGAGCTTACACCTTCTTTAGCGAGGCTTGTCATACAGAAAGGgtaactaatgcagaattttctctcaagccttgagaattgtccttattc-----ttcaatgagcggtttatttatttttgtttgtaaaaattctgtatcaggtaagg-----atgtgagaatgttga-ttcccatattctttttggtccag----------

upper sequence: GLYMA03G34050.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G46100.1 (Arabidopsis thaliana), 5'ss of exon 3
CTTTATTGTTTTGAAGATCGAGGCAATCGCCGTGTTGCATTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATCCAGAAAGGgtaa--aattcatttttatgcatattttagattttcctatatttacagttttgatgtaaa---gtctatgtctaatagttaaactttaatctacataagataattcttttgtatgtgaatgccaaattctcattttcatgtctgttctttaatttttag
||||| || ||||||||| |||| ||||| ||||| |||||||||||||| ||||| |||||||| || ||||| || || ||||||||||||  || |||  |  | |     || ||| ||  | ||     |  | |        |    | | | | |  | || |||| ||  | |  ||      ||   | ||   |||  ||    |||| ||| ||| | |  || |            
CTTTACTGCTTTGAAGATAGAGGAAATCGGCGTGTAGCATTGAGGCCTGAGCTTACACCTTCTTTAGCCAGGCTTGTCATACAGAAAGGgtaataaactcagctccaagt---cttgagaattgtccatgaaatctttctaaggacggatttatttgtttttgcttgtaaaacattcct-tgtatccaggtatggatgtgagagtgt-tggttgattcccatattctttttggtccag----------

upper sequence: GLYMA03G34050.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0040g01360.t01 (Vitis vinifera), 5'ss of exon 3
CTTTATTGTTTTGAAGATCGAGGCAATCGCCGTGTTGCATTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATCCAGAAAGGgta-----aaattcatttttatgcatattttagattttcctatatttacagttttg----atgtaaagtctatgtctaatagttaaactttaatcta--cataagataattc-----ttttgtatgtgaatgccaaattctcattttcatgtc--tgttctttaatttttag
|| || |||||||| ||||| || ||||||||||||||||| |||||||| || ||||||||||||||||| || ||||| |||||||||||     | | |  || || || || |  | | || | || | |  |   | | |    |  ||||   | || ||  |     || |||  |  |  |||      |||      ||||||||     | |  |   |  | ||| || ||  |||| |||  | |  ||
CTATACTGTTTTGAGGATCGGGGAAATCGCCGTGTTGCATTAAGGCCTGAGCTCACTCCTTCTTTGGCAAGACTTGTGATACAGAAAGGgtactaagatactagttcttctgtatttcattgcttctgctttctgaatgatgtagtgtcaactaaaaaatttgactgttcaaagaattttggttcattcatttatctatttataatttttgtatccaggtacagatgccagaatttgatctccatgtttttttctgtccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21675349|gb|BQ627700.1|BQ627700
EST:     TTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATCCAGAAAGG                         GAAGTCCGTGTCATTACCAATAAAGTGGTTCACTGTTGGACAATGTTGGCG
genomic: TTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATCCAGAAAGGgtaaaattca ... taatttttagGAAGTCCGTGTCATTACCAATAAAGTGGTTCACTGTTGGACAATGTTGGCG
EST: gi|37994195|gb|CF805941.1|CF805941
EST:     TTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATCCAGAAAGG                         GAAGTCCGTGTCATTACCAATAAAGTGGTTCACTGTTGGACAATGTTGGCG
genomic: TTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATCCAGAAAGGgtaaaattca ... taatttttagGAAGTCCGTGTCATTACCAATAAAGTGGTTCACTGTTGGACAATGTTGGCG
EST: gi|6951687|gb|AW423755.1|AW423755
EST:     TGATCCAGAAAAG                         GAAGTCCGTGTCATTACCAATAAAGTGGTTCACTGTTGGACAATGTTGGCG
genomic: TGATCCAGAAAGGgtaaaattca ... taatttttagGAAGTCCGTGTCATTACCAATAAAGTGGTTCACTGTTGGACAATGTTGGCG