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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGAAAAGCTGCAGTGGTTTTTAGATGCAGTGAAGGAGCTTCCTAATGAGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGgtcagatggaaattctttactttttctgttgcttcttttttgctttgctactttgagatataccttttttttttcaatttatgttttcttgctttattat...

Basic information

species Glycine max
transcript GLYMA03G33830.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7590650|gb|AW706398.1|AW706398
EST:     AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAG                         GTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
genomic: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGgtcagatgga ... tctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: gi|208057882|gb|GD856443.1|GD856443
EST:     GGGGCTCACTTGTCATCTTGGTTCAACAATTACCAAG                         GTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
genomic: GGGGCCCAC-TGTCATCTTGGTTCAACAATTACCAAGgtcagatgga ... tctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: gi|193572576|gb|FK528235.1|FK528235
EST:     AGCTCAAACTTGTAGGGGCCCGCTGTCATCTTGGTTCAACAATTACCAAG                         GTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
genomic: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGgtcagatgga ... tctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: gi|15286766|gb|BI470657.1|BI470657
EST:     AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAG                         GTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
genomic: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGgtcagatgga ... tctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: gi|193355263|gb|FK321780.1|FK321780
EST:     AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAG                         GTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
genomic: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGgtcagatgga ... tctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: gi|308098900|gb|HO760741.1|HO760741
EST:     AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAG                         GTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
genomic: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGgtcagatgga ... tctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: gi|21256772|gb|BQ453660.1|BQ453660
EST:     AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAG                         GTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
genomic: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGgtcagatgga ... tctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: gi|192325345|gb|FK017146.1|FK017146
EST:     AGCTCAAACTTGTAGGG-CCCACTGTCATCTTGGTTCAACAATTACCAAG                         -TAGACATTTTCAGG-ATGCAGCCA
genomic: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGgtcagatgga ... tctttttcagGTAGACATTTTCAGGGATGCAGCCA
EST: gi|14258605|gb|BG881513.1|BG881513
EST:     AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAG                         GTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
genomic: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGgtcagatgga ... tctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: gi|193423964|gb|FK390303.1|FK390303
EST:     AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAG                         GTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
genomic: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGgtcagatgga ... tctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: gi|192320763|gb|FK013853.1|FK013853
EST:     AGCTCAAACTTGTAGGG-CCCACTGTCATCTTGGTTCA-CAATTACCAAG                         -TAGACATTTTCAGG-ATGCAGCCACCATTATGATCA-CTACAT-GAC-AA
genomic: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGgtcagatgga ... tctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
EST: gi|11413960|gb|BF426035.1|BF426035
EST:     AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAG                         GTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA
genomic: AGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGgtcagatgga ... tctttttcagGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAATGAAAAGCTGCAGTGGTTTTTAGATGCAGTGAAGGAGCTTCCTAATGAGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGgtcagatggaaattctttactttttctgttgcttcttttttgctttgctactttgagatataccttttttttttcaatttatgttttcttgctttattat

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