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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTAGCACACGTGCCTCCTCCTCGGCCTAAGCGCAAAGCTTCTCATCCTTATCCACAAAAGGCATCCAAAAATGGTTTGATTCTATTCAACACAATGATgttctgttccttaaaatcacagaatgcacattcttgacatgatgtttttatggtttggcagttttgttgccattgccagcttccatggtttatgtttcttccactag

Basic information

species Glycine max
transcript GLYMA03G33440.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G33440.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0040g03220.t01 (Vitis vinifera), 5'ss of exon 3
-------------------------CAGTAGCACACGTGCCTCCTCCTCGGCCTAAGCGCAAAGCTTCTCATCCTTATCCACAAAAGGCATCCAAAAATGGTTTGATTCTATTCAACACAATGATgttctgttccttaaaatcacagaatgcacattcttgacatgatgtttttatggtttggcagtt-ttgttgccattgccagcttccatggtttatgtttcttccactag
                         |||||||||| ||||| || ||||| || ||||||||||||  ||||||||| |||||||||||| | | ||||||||||   || ||    | ||| |   | | || || |      | | || ||     || || || ||   || ||   ||  | || ||||  | |||  |||                            
TTTTTAAAGGTCCAAAAGAATGGGACAGTAGCACATGTGCCACCGCCTCGCCCAAAGCGCAAAGCTATTCATCCTTACCCACAAAAGGCACCAACAAATGgtttgtccctcttagtgaaaataaaaatatatttctga----tgctggattcaa---tttaac-tgttggcattctgacatgcaatttcttgtaacaattaacag----------------------------