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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTGGTTTCAGAGGCCCAAAGACATCACAAGAAAATTGTTATCTGGAGATCTTGACCTTGGTATTGTTGGACTCGATACTTTCAGTGAACATGGCCAGgtcagcattttcgcatttgcagattagtgcccctgtgtattcgccagactcaaattgttttatcgtctaattttcttttgttag

Basic information

species Glycine max
transcript GLYMA03G33360.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G33360.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0035g00760.t01 (Vitis vinifera), 5'ss of exon 3
AGTTTGGTTTCAGAGGCCCAAAGACATCACAAGAAAATTGTTATCTGGAGATCTTGACCTTGGTATTGTTGGACTCGATACTTTCAGTGAACATGGCCAGgtcagcattttcgcatttgcag--attagtgcccctgtgtattcgccagactcaaatt---gttttatcgtcta-----attttcttttgttag------
||| ||||||||| |||| ||||||||    ||||||||||| ||||||||||| |||||||| || ||||| || |||||  ||| |||| |||| ||||| ||||||   | ||  |  |  ||| | |  | |  |   ||    || |  | ||     ||||  | |||     ||||||| |  ||        
AGTCTGGTTTCAGCGGCCAAAAGACATTGTTAGAAAATTGTTGTCTGGAGATCTAGACCTTGGCATCGTTGGTCTTGATACAGTCACTGAATATGGACAGgtaagcattaaggtataggttgttattggggtgcatacgggatctttggatttcattttgaaatttagtgcctactaaaattttctctcttttatagttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208103251|gb|GD901129.1|GD901129
EST:     ATACTTTCAGTGAACATGGCCAG                         GGTAGTGAAGATCTTATCATTGTCCACGAGGCTCTCGAGTATGGTGATTGC
genomic: ATACTTTCAGTGAACATGGCCAGgtcagcattt ... cttttgttagGGTAGTGAAGATCTTATCATTGTCCACGAGGCTCTCGAGTATGGTGATTGC
EST: gi|213597649|gb|DB962159.1|DB962159
EST:     ATCTTGACCTTGGTATTGTTGGACTCGATACTTTCAGTGAACATGGCCAG                         GGTAGTGAAGATCTTATCATTGTCCACGAGGCTCTCGAGTATGGTGATTGC
genomic: ATCTTGACCTTGGTATTGTTGGACTCGATACTTTCAGTGAACATGGCCAGgtcagcattt ... cttttgttagGGTAGTGAAGATCTTATCATTGTCCACGAGGCTCTCGAGTATGGTGATTGC
EST: gi|192295795|gb|FG990861.1|FG990861
EST:     ATCTTGACCTTGGTATTGTTGGACTCGATACTTTCAGTGAACATGGCCAG                         GGTAGTGAAGATCTTATCATTGTCCACGAGGCTCTCGAGTATGGTGATTGC
genomic: ATCTTGACCTTGGTATTGTTGGACTCGATACTTTCAGTGAACATGGCCAGgtcagcattt ... cttttgttagGGTAGTGAAGATCTTATCATTGTCCACGAGGCTCTCGAGTATGGTGATTGC