1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TATCATTCCTCACACTCACACCCTCCTCTTAATGAGAGGATTATTTCATCCATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattcagaaataggtaaaaaacggtgacttgttagtgcttcaattggtttgccaaggtaaccaattctgttttaatgcag
species | Glycine max |
transcript | GLYMA03G33000.5 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG GGCCTGGTGCTCCAACGATCTTCAATTGTEST: gi|207840938|gb|GD810193.1|GD810193
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG GGCCTGGTGCTCCAACGATCTTCAATTGTEST: gi|193320747|gb|FK283132.1|FK283132
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG GGCCTGGTGCTCCAACGATCTTCAATCGTEST: gi|298171586|gb|HO021178.1|HO021178
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGGCCTTGAGATAG GGCCTGGTGCTCCAACGATCTTCAATTGTEST: gi|298188442|gb|HO035135.1|HO035135
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: ATGACCAGAAGATCTGGTTGCTGCACACCCGTGGCACGACCTTGAGATAG GGCCTGGTGCTCCAACGATCTTCAATTGTEST: gi|151404690|gb|EV274504.1|EV274504
genomic: ATGACCAGAAGATCTG-TTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG GGCCTGGTGCTCCAACGATCTTCAATTGTEST: gi|298185272|gb|HO030485.1|HO030485
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: ATGACCAGAAGATCTGGTTGCTGCACACCCGTGGCACGACCTTGAGATAG GGCCTGGTGCTCCAACGATCTTCAATTGTEST: gi|10236851|gb|BE805739.1|BE805739
genomic: ATGACCAGAAGATCTG-TTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: GCACGACCTTGAGATAG GGCCTGGTGCTCCAACGATCTTCAATTGTEST: gi|208275603|gb|GE078223.1|GE078223
genomic: GCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: TGCTGCACACCCGTGGCACGACCTTGAGATAG GGCCTGGTGCTCCAACGATCTTCAATTGTEST: gi|5510301|gb|AI856743.1|AI856743
genomic: TGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG GGCCTGGTGCTCCAACGATCTTCAATTGTEST: gi|192296495|gb|FG989111.1|FG989111
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG GGCCTGGTGCTCCAACGATCTTCAATTGTEST: gi|192295958|gb|FG989380.1|FG989380
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG GGCCTGGTGCTCCAACGATCTTCAATTGTEST: gi|16105384|gb|BI893124.1|BI893124
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG GGCCTGGTGCTCCAACGATCTTCAATTGTEST: gi|9986811|gb|BE660919.1|BE660919
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG GGCCTGGTGCTCCAACGATCTTCAATTGTEST: gi|192324459|gb|FK015810.1|FK015810
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG GGCCTGGTGCTCCAACGATCTTCAATTGTEST: gi|7925031|gb|AW831057.1|AW831057
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG GGCCTGGTGCTCCAACGATCTTCAATTGTEST: gi|8827754|gb|BE211484.1|BE211484
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG GGCCTGGTGCTCCAACGATCTTCAATTGTEST: gi|298199436|gb|HO042799.1|HO042799
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG GGCCTGGTGCTCCAACGATCTTCAATTGTEST: gi|207702226|gb|GD682981.1|GD682981
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: TTGCTGCACACCCGTGGCACGACCTTGAGATAG GGCCTGGTGCTCCAACGATCTTCAATTGTEST: gi|17022987|gb|BM094021.1|BM094021
genomic: TTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG GGCCTGGTGCTCCAACGATCTTCAATTGT
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATCATTCCTCACACTCACACCCTCCTCTTAATGAGAGGATTATTTCATCCATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattcagaaataggtaaaaaacggtgacttgttagtgcttcaattggtttgccaaggtaaccaattctgttttaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC