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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGCAGGAGTGGGCTGACCAATTAATCAGTGATGTTGATCCTTTGACTTCTAACTGGAATGATCTTCTTGCTGACAACATTCAAGATCTGGAACCAAAGgttaagtttttcatttctcaaaccaatatgagcttgcagagtatacttattagcaatttattcaaggagtgtgttagaatctcatttgtttcttaaggcggtgtaccag

Basic information

species Glycine max
transcript GLYMA03G32350.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G32350.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G28610.1 (Arabidopsis thaliana), 5'ss of exon 2
TTGGCAGGAGTGGGCTGACCAATTAATCAGTGATGTTGATCCTTTGA---CTTCTAACTGGAATGATCTTCTTGCTGACAACATTCAAGATCTGGAACCAAAGgttaagtttttcatttctcaaaccaa-tatgagcttgcagagtatacttattagcaatttattcaaggagtgtgttagaatctcatttgtttcttaaggcggtgtaccag
   ||| || ||||||||||| || |||| ||||| |||||||||||   || ||||||||||||||||  |   ||| |  | |    ||   ||  ||||||||    || |  |||||    |||| | |   |||   |  | || ||  || |  | |  |||||  ||   | |  |    |     || || ||            
---GCATGAATGGGCTGACCATTTGATCACTGATGATGATCCTTTGATGTCTACTAACTGGAATGATCTCTTGCTTGAAACAAATTCCAATTCAGATTCAAAGgttg---ttatagtttcttgttccaagtttttacttt--gtttctatttgatatctgtattctcaagttgt---tcaatactggacacacttttttag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13789798|gb|BG652389.1|BG652389
EST:     CTAACTGGAATGATCTTCTTGCTGACAACATTCAAGATCTGGAACCAAAG                         GTCACAAAATCATCTTCACAACTTCCAATAGAACACCAATCTCAAAGCCAT
genomic: CTAACTGGAATGATCTTCTTGCTGACAACATTCAAGATCTGGAACCAAAGgttaagtttt ... ggtgtaccagGTCACAAAATCATCTTCACAACTTCCAATAGAACACCAATCTCAAAGCCAT