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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTATTTCCAAACGCAATCCGAGCCCGCCTTTTGCGGCCTCGCCAGCCTGTCCATGGTCCTCAATGCTCTTGCCATTGATCCTGGCAGAAAATGGAAAGgtacataacaaacaatctaatgcttccatcactaacctaattaattatgaatatttgcttgaatcatttaatcaattgtctcgagttctattatttgccttgcag

Basic information

species Glycine max
transcript GLYMA03G32200.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G32200.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0005g03760.t01 (Vitis vinifera), 5'ss of exon 1
TCCTATTTCCAAACGCAATCCGAGCCCGCCTTTTGCGGCCTCGCCAGCCTGTCCATGGTCCTCAATGCTCTTGCCATTGATCCTGGCAGAAAATGGAAAGgtacataacaaacaatctaatgcttccatcactaacctaattaattatgaatatttgcttgaatcatttaatcaattgtctcgagttctattatttg--ccttgcag---
||||| || || || ||||| ||||| || | ||| ||  | || | ||| ||||||||| | ||||| |||||||||||||| || ||||||||||||||||        ||     | | | |   | |   |  |   |  || |   || ||| ||      || |  |||   |||  || |   || | |   ||||| |    
TCCTACTTTCAGACACAATCAGAGCCTGCATATTGTGGATTGGCTACCCTTTCCATGGTCTTGAATGCCCTTGCCATTGATCCAGGAAGAAAATGGAAAGgta--------acttctaattacatttgtta--gaagtggatgcttgtttctagttgtttcttctgttaagacaaaactcttaagattcgttgtctcttccttgaactca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26047568|gb|CA784307.1|CA784307
EST:     GTCCATGGTCCTCAATGCTCTTGCCATTGATCCTGGCAGAAAATGGAAAG                         GACCTTGGAGATGGTTTGATGAATCTATGTTGGACTGCTGTGAGCCTCTAG
genomic: GTCCATGGTCCTCAATGCTCTTGCCATTGATCCTGGCAGAAAATGGAAAGgtacataaca ... tgccttgcagGACCTTGGAGATGGTTTGATGAATCTATGTTGGACTGCTGTGAGCCTCTAG
EST: gi|209714258|gb|BW677011.1|BW677011
EST:     GTCCATGGTCCTCAATGCTCTTGCCATTGATCCTGGCAGAAAATGGAAAG                         GACCTTGGAGATGGTTTGATGAATCTATGTTGGACTGCTGCGAGCCTCTAG
genomic: GTCCATGGTCCTCAATGCTCTTGCCATTGATCCTGGCAGAAAATGGAAAGgtacataaca ... tgccttgcagGACCTTGGAGATGGTTTGATGAATCTATGTTGGACTGCTGTGAGCCTCTAG