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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCGGCGTTGTTTGGGTTGTGGATCTCGATCCTCCGTTACACGATGATAAGAAACCGGCACCGCTTCTTTCTCACTATTGCAGTATCATCACTAGCTTGgtgaattacatcacgtgctcgttattgcgtcttttttgttttccgagttaagttcgttatttttcttataactgtttttacgtgaatgtcttctgcag

Basic information

species Glycine max
transcript GLYMA03G31220.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G31220.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G131998_T01 (Zea mays), 5'ss of exon 3
---ATTCGGCGTTGTTTGGGTTGTGGATCTCGATCCTCCGTTACACGATGATAAGAAACCGGCACCGCTTCTTTCTCACTATTGCAGTATCATCACTAGCTTGgtg-aattacatcacgtgctcgttattgc-----gtct---tttttgttttccgagttaagttcgttatttttcttataactgtttttacgt---gaatgtcttctgcag--------------------------------------------------------------------
    || | |  | |  |||  |    |   || |    ||| || | |||||| ||||| |   |  |||||  ||||||||||||||||||||||||| ||||   |  |  |       ||  |||| |     || |   ||| |   | |    || | || ||  |   | |   | || ||   |       || |||| || ||                                                                     
TTGGTTAGTCACTTTGCGGGAAGATAGTGCAGAGCAG--GTTTCA-GTTGATAACAAACCTGTGTCAATTCTTGGTCACTATTGCAGTATCATCACTAGCATGgtatgaacaagttctaaattctgtattaccagtggtatggatttgtaagtcctacatttatttagtagtgaatgtgtaatcttttggcaaacccacaaagtctactacacttcagttttatttgtttctcctttcatgtcatgtataaccatgctttatcgtttgcttgggattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11274165|gb|BF324533.1|BF324533
EST:     AGAAACCGGCACCGCTTCTTTCTCACTATTGCAGTATCATCACTAGCTTG                         GAATTTTCACCGGATGGTCGCTATATTTTAAGCGCAGATCGTGATTTCAAA
genomic: AGAAACCGGCACCGCTTCTTTCTCACTATTGCAGTATCATCACTAGCTTGgtgaattaca ... tcttctgcagGAATTTTCACCGGATGGTCGCTATATTTTAAGCGCAGATCGTGATTTCAAA
EST: gi|8282840|gb|BE020401.1|BE020401
EST:     AGAAACCGGCACCGCTTCTTTCTCACTATTGCAGTATCATCACTAGCTTG                         GAATTTTCACCGGATGGTCGCTATATTTTAAGCGCAGATCGTGATTTCAAA
genomic: AGAAACCGGCACCGCTTCTTTCTCACTATTGCAGTATCATCACTAGCTTGgtgaattaca ... tcttctgcagGAATTTTCACCGGATGGTCGCTATATTTTAAGCGCAGATCGTGATTTCAAA
EST: gi|58021672|gb|CX708413.1|CX708413
EST:     CAGTATCATCACTAGCTNG                         GAATTTTCACCGGATGGTCGCTATATTTTAAGCGCAGATCGTGATTTCAAA
genomic: CAGTATCATCACTAGCTTGgtgaattaca ... tcttctgcagGAATTTTCACCGGATGGTCGCTATATTTTAAGCGCAGATCGTGATTTCAAA
EST: gi|20207492|gb|BQ133581.1|BQ133581
EST:     AGAAACCGGCACCGCTTCTTTCTCACTATTGCAGTATCATCACTAGCTTG                         GAATTTTCACCGGATGGTCGCTATATTTTAAGCGCAGATCGTGATTTCAAA
genomic: AGAAACCGGCACCGCTTCTTTCTCACTATTGCAGTATCATCACTAGCTTGgtgaattaca ... tcttctgcagGAATTTTCACCGGATGGTCGCTATATTTTAAGCGCAGATCGTGATTTCAAA