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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGAAAATCAATAGAGACAGTAGTTGATTGGGTTGCCAATGAAGTAAACATAAACAAAACTTATGTCATTTTCCGAACTTATGCTCCTGTCCATTTCAGgtttgcctaaactttcaaactggcttacctgtacttgtatctttatttgctcaaaatttgtttgccaataattttttaatggtgaactcagttacagtgg...

Basic information

species Glycine max
transcript GLYMA03G30910.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G30910.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0104g00120.t01 (Vitis vinifera), 5'ss of exon 3
TCAGAAAATCAATAGAGACAGTAGTTGATTGGGTTGCCAATGAAGTAAACATAAACAAAACTTATGTCATTTTCCGAACTTATGCTCCTGTCCATTTCAGgtttgcctaa--actttcaaactggcttacctgtacttgtatctttatttgctcaaaatttgtttgcc-aataattttttaatggt---gaactcagttacagtgg
 ||  | |||| |  ||||| |  | ||||||||| | |   | ||||| || |   | ||  | ||| | || ||||| ||||||||||| |||||||||||||||| |   ||||   | |   ||   ||||    | |   || || |   || |||||      |||||||| | | ||||   |  ||  | |   |   
ACAAGAGATCACTTAAGACATTGTTGGATTGGGTTACTAGCCATGTAAATATGAGTGAGACCCAAGTCTTCTTTCGAACCTATGCTCCTGTTCATTTCAGgtttgccttattgctttattatttaattctttgtagccttgttaatacttcc---aattttgtccatttaataatttgtcactggttttggtcttggcttttg---