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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAACAACATTCGATATTATATCCTTCCTGACAGCTTGAATCTTGAGACTTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtatattatttgactgtcactaaaatgtttatcagaagttaattatgttcaggttgactgttatcaagggatatctggttctcaaagttttgattttatttgcag

Basic information

species Glycine max
transcript GLYMA03G30880.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G30880.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g37430.1 (Oryza sativa), 5'ss of exon 3
GGCAACAACATTCGATATTATATCCTTCCTGACAGCTTGAATCTTGAGACTTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtatattatttgactgtcactaaaatgtttatcagaagttaattatgttcaggttgactgttatcaagggatatctggttctcaaagttttgattttatttgcag
|| ||||||||||| ||||| || |||||||||||||| || || ||||| || |||||||| ||  | || | | ||||| |||||||||||||||| ||| |  || ||| |||     || ||||  || || |    || |  | |  |   | ||| |||  |||||    ||    |    ||                     
GGAAACAACATTCGCTATTACATTCTTCCTGACAGCTTAAACCTGGAGACATTGCTGGTTGAGGATACACCGAGGGTCAAGGCTAAGAAGCCAACTGCAGgtttgata-attgttttgtc-tctctaagttgattttactgagctgctgaact---gtttgtctg--atcaaaccttaatccggaaacag--------------------

upper sequence: GLYMA03G30880.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os04g39444.1 (Oryza sativa), 5'ss of exon 3
GGCAACAACATTCGATATTATATCCTTCCTGACAGCTTGAATCTTGAGACTTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtatattatttgactgtcactaaaatgtttatcagaagttaattatgttcaggttgactgttatcaagggatatctggttctcaaagttttgattttatttgcag
|| ||||||||||| ||||| ||||| ||||| ||||| ||||| || |||||||| || || ||  | || |   ||||| |||||||||||||||| |||||   | |   ||   ||  |            |||     || | | || ||      |    ||||||        ||     | ||  || | || ||       
GGAAACAACATTCGCTATTACATCCTCCCTGATAGCTTAAATCTGGAAACTTTACTAGTAGAGGATACCCCGAGAGTCAAGGCTAAGAAGCCAACTGCAGgtatgaaaaa--gttcccctacc-----------catctagttttgagtttgatcgatacaagaactatcaa-------ttgacctaccaatcttcgtttgtaaccag--

upper sequence: GLYMA03G30880.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G416061_T01 (Zea mays), 5'ss of exon 4
GGCAACAACATTCGATATTATATCCTTCCTGACAGCTTGAATCTTGAGACTTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtatattatttgactgtcactaaaatgtttatcagaagttaattatgttcaggttgactgttatcaagggatatctggttctcaaagttttgattttatttgcag
|| |||||||| || ||||||||||||||||||||| | || || |||||||| |||||||| ||  | || | | |||||||||||||||| ||| |||||        || |||  ||  || |  ||  ||     ||  || |  |  | |  |       ||||||    ||   |  |  |||||     |             
GGAAACAACATCCGCTATTATATCCTTCCTGACAGCCTAAACCTGGAGACTTTGCTGGTTGAGGAAACACCAAGGGTCAAGCCTAAGAAGCCTACTTCTGgtcaga---gttctttttctcccatttcaaccttc----gagatttaccacctgctagc-----attatcatttcatccatcttcatcaaaaaccag-------------

upper sequence: GLYMA03G30880.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G02840.2 (Arabidopsis thaliana), 5'ss of exon 4
GGCAACAACATTCGATATTATATCCTTCCTGACAGCTTGAATCTTGAGACTTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtatattatttgactgtcactaaaatgtttatcagaagttaattatgttcaggttgactgttatcaagggatatctggttctcaaagttttgattttatttgcag
|| ||||||||||| |||||||| ||||| ||||| |||||||| |||||||| |||||||||||  |||| |  ||||| || || ||||||||||| ||||    | |  ||||   | |  || || | |   |  |   ||  || ||||   | | |   | |||      | | | ||||||     |||| | | |       
GGAAACAACATTCGCTATTATATTCTTCCGGACAGTTTGAATCTGGAGACTTTGCTGGTTGAAGACACTCCAAGAATCAAACCCAAAAAGCCAACTGCAGgta--acaaaacatttc-ttttttctgaactatgcctttgtttttgtttttgtttttgcttagactcatctt----tctattgttctc-----tttggtatcag------

upper sequence: GLYMA03G30880.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0104g00160.t01 (Vitis vinifera), 5'ss of exon 5
GGCAACAACATTCGATATTATATCCTTCCTGACAGCTTGAATCTTGAGACTTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattg-tatat-tatttgactgtcactaaa---atgtttatcagaagttaattatgttcaggttgactgttatcaagggatatctggttctcaaagttttgattttatttgcag
|||||||||||||| |||||||||||||| ||||||||||||||||||||  |  |||| |||||| | |||| | ||||||| ||||||||||| || ||||||| | ||| | |||| || | | |  |   || ||  |  ||  |   ||    |    || | | || | || |  | | |   | |||                     
GGCAACAACATTCGGTATTATATCCTTCCCGACAGCTTGAATCTTGAGACCCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAGgtattgctctatctctttggctctaattctatgcattttcgtatgatttatgttccccttgttttaattttttttaatgcttttttccatttcag--------------------

upper sequence: GLYMA03G30880.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv19s0015g01330.t01 (Vitis vinifera), 5'ss of exon 3
GGCAACAACATTCGATATTATATCCTTCCTGACAGCTTGAATCTTGAGACTTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtatattatttgactgtcactaaaatgtttatcagaagttaattatgttcaggttgactgttatcaagggatatctggttctcaaagttttgattttatttgcag
|||||||| ||||| |||||||| ||||| |||||| | ||||| ||||| || ||||| |||||| | |||| | ||||||| |||||||||||||||||||||| |||||       || |  || |    || | | |  |||||  | || |   |   | || | || |  | | |   ||                        
GGCAACAATATTCGGTATTATATACTTCCCGACAGCATAAATCTGGAGACATTGCTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACTGCTGgtattgcatatttcccttttgac-ttatataccttgtgatagattaatactttttaaaat--ttttttttaatgcctctataaatccag---------------------

upper sequence: GLYMA03G30880.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S37_118V6.1 (Physcomitrella patens), 5'ss of exon 3
GGCAACAACATTCGATATTATATCCTTCCTGACAGCTTGAATCTTGAGACTTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtatattatttgactgtcactaaaatgtttatcagaagttaattatgttcaggttgactgttatcaagg--gatatctggt-tctcaaagttttgattttatttgcag
|||||||||||||||||||||||| | |||||||||||||||||||| ||  | || ||||| ||  | ||     | ||    ||||| ||   ||| ||| |  | | |||      |      | ||   |||||      |  || | |     ||| || |||  |     | ||  | || || ||     |||             
GGCAACAACATTCGATATTATATCTTGCCTGACAGCTTGAATCTTGACACGCTTCTTGTTGACGATACACCGCGCGTGAAAGTCAAGAAACCTGTTGCAGgtctc-tttgttaaaccctttgagtcagaagtcttatctagtactctttttttattccttggct-ttactagaattgttacattgtatcccagcacgttgtg-----------

upper sequence: GLYMA03G30880.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S116_13V6.1 (Physcomitrella patens), 5'ss of exon 3
GGCAACAACATTCGATATTATATCCTTCCTGACAGCTTGAATCTTGAGACTTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtatattatttgactgtcactaaaatgtttatcagaagttaattatgttcaggttgactgttatcaagggatatctggttctcaaagttttgattttatttgcag
|| |||||||| |||||||| || ||||||||||| |||||||| || ||  | || || || ||  | |||    | ||  | ||||||||   |||||     |||| ||  | || | |  ||  ||     | |||        |  | | |  ||     ||||   ||  ||     || | | | ||   |    ||      
GGAAACAACATCCGATATTACATACTTCCTGACAGTTTGAATCTCGACACGCTTCTTGTGGATGATACACCTCGCGTGAAATCCAAGAAGCCTGTTGCTG-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208167600|gb|GD963768.1|GD963768
EST:     TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|298174427|gb|HO014572.1|HO014572
EST:     TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCTGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|207712851|gb|GD693909.1|GD693909
EST:     AGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: AGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|9900352|gb|BE609320.1|BE609320
EST:     TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGNGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|13480558|gb|BG509901.1|BG509901
EST:     TTTACTGGTTGAAGAGGCTCCTAAAATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|31473802|gb|CD415830.1|CD415830
EST:     TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|254323967|gb|GR836199.1|GR836199
EST:     TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|12773904|gb|BG238831.1|BG238831
EST:     TTTACTGGTTGAAGAAGCTCCTAAGATCAAGCCTTAGAAGCCTACTGCTG                         GGAAGCCTTTGGGAAGAAGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|193646164|gb|FK589599.1|FK589599
EST:     TTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|8827595|gb|BE211325.1|BE211325
EST:     TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|8826472|gb|BE210202.1|BE210202
EST:     TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|4437132|gb|AI522997.1|AI522997
EST:     TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|9900496|gb|BE609464.1|BE609464
EST:     TTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAANAAGCCAACTTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGT
genomic: TTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAAC-TGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGT
EST: gi|298198717|gb|HO042080.1|HO042080
EST:     TTTACTGGTTGAGGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|27424994|gb|CA936514.1|CA936514
EST:     TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|298193977|gb|HO040625.1|HO040625
EST:     TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|15285034|gb|BI468925.1|BI468925
EST:     TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|254334206|gb|GR849124.1|GR849124
EST:     TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|7925936|gb|AW831962.1|AW831962
EST:     TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|19269395|gb|BM885651.1|BM885651
EST:     TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|254323968|gb|GR836200.1|GR836200
EST:     TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|193493026|gb|FK460000.1|FK460000
EST:     TAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|6846635|gb|AW348925.1|AW348925
EST:     TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|15815172|gb|BI787447.1|BI787447
EST:     TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|254334205|gb|GR849123.1|GR849123
EST:     TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|298186306|gb|HO036939.1|HO036939
EST:     TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|31468972|gb|CD411000.1|CD411000
EST:     TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|298172347|gb|HO019387.1|HO019387
EST:     TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
EST: gi|6482740|gb|AW201964.1|AW201964
EST:     TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGC
EST: gi|31473716|gb|CD415744.1|CD415744
EST:     TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTG                         GGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC
genomic: TTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtata ... ttatttgcagGGAAGCCTTTGGGAAGAGGGCGGGGGCGAGGACGTGGACGCGGCCGTGGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCAACAACATTCGATATTATATCCTTCCTGACAGCTTGAATCTTGAGACTTTACTGGTTGAAGAGGCTCCTAAGATCAAGCCTAAGAAGCCAACTGCTGgtattgtatattatttgactgtcactaaaatgtttatcagaagttaattatgttcaggttgactgttatcaagggatatctggttctcaaagttttgattttatttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC