Sequence
atgc intronic sequence ATGC exonic sequenceGGATGATCACAAGGTTGACATGCATGATGGATGCACCTTCAATCATCGATATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTgtaagttatttataattataatagctggactgtttgatgatttgatgtgctattatttctcagagtggcgttttttacatgttattttttgttatttaat...
Basic information
species | Glycine max |
transcript | GLYMA03G30250.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G30250.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g06740.t01 (Vitis vinifera), 5'ss of exon 3
GGATGATCACAAGGTTGACATGCATGATGGATGCACCTTCAATCATCGATATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTgtaagttatttataattataatagctggactg--tttgatgatttgatgtgctattatttctcagagtggcgttttttacatgttattttttgttatttaat--
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GGGTGATCACAAGGTTGACATGCACGATGGGTGTACCTTCAACCATCGATATGTCAAATCAAATCCTCAGGAAGTTGAAAATGCCACATGGATGCTAACTgtaagttattttatcctgttatatacatatgaacttctgttgtttgatcattttcaatgtgctggaaatgcatact----aagtcattctatattatctcatat
upper sequence: GLYMA03G30250.2 (Glycine max), 5'ss of exon 3
lower sequence: PP1S35_97V6.1 (Physcomitrella patens), 5'ss of exon 2
GGATGATCACAAGGTTGACATGCATGATGGATGCACCTTCAATCATCGATATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTgtaagttatttataattataatagctggactg--tttgatgatttgatgtgctattatttctcagagtggcgttttt-tacatgttattttttgttatttaat
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AGATGAACACAAAGTTGATATGCACAATGGATGCACTTTCAATCATCGCTATGTGAAGTCTAACCCACAAGAGGTCGAGAACGCAACCTGGATGCTAACGgtaa--taccagcaagccatatctctgagtttctttttatcaattagtggaaagatagtttgcgtaataatctgcttgtaatttctacgtcctga-atcgaac
upper sequence: GLYMA03G30250.2 (Glycine max), 5'ss of exon 3
lower sequence: EFJ14577 (Selaginella moellendorffii), 5'ss of exon 2
GGATGATCACAAGGTTGACATGCATGATGGATGCACCTTCAATCATCGATATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTgtaa-----gttatttataattataatagctggactgtttgatgatttgatgtgctattatttctcagagtggcgttttttacatgtt---attttttgttatttaat-------------------------
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CGACGATCACAAGGTGGACATGCACAATGGTTGCACCTTCAACCATCGCTATGTCAAGTCCAATCCACAGGAAGTCGAGAATGCTACCTGGATGCTCACGgtaacgttggtttcctcttggtccaatcgtttcttcgtttgatgttct--tgtgctgctagcttttgaagctatgcaagcttcagtttcagaagtttgatcgagtaacccgacgactgctgtttggtttccag
upper sequence: GLYMA03G30250.2 (Glycine max), 5'ss of exon 3
lower sequence: EFJ26279 (Selaginella moellendorffii), 5'ss of exon 2
GGATGATCACAAGGTTGACATGCATGATGGATGCACCTTCAATCATCGATATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTgtaa-----gttatttataattataatagctggactgtttgatgatttgatgtgctattatttctcagagtggcgttt-tttacatgttatt--ttttgttatttaat-------------------------
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CGACGATCACAAGGTGGACATGCACAATGGTTGCACCTTCAACCATCGCTACGTCAAGTCCAATCCACAGGAAGTCGAGAATGCTACCTGGATGCTCACGgtaacgttggtttcctcttggtccaatcgtttcttcgtttgatgttct--tgtgctgctagcttttgaagctatgcaagcttaagtttcagaagtttgatcgagtaacccgacgactgctgtttggtttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151404649|gb|EV274463.1|EV274463EST: ATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACT GTTTTCAATAGTTTTGGAAGACATTTCTGCTTGCACTTTGAG-CGTTC
genomic: ATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTgtaagttatt ... tttcatgcagGTTTTCAATAGTTTTGGAAGACATTTCTGCTTGCACTTTGAGGCGTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGATGATCACAAGGTTGACATGCATGATGGATGCACCTTCAATCATCGATATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTgtaagttatttataattataatagctggactgtttgatgatttgatgtgctattatttctcagagtggcgttttttacatgttattttttgttatttaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA