Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGGAAGAGATTGGCAGATCATAATCGCCGCAGAAGAAAAACACAGCAACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaaccttctctcttaaattcttaattattccaactcttatttctaatttttgtcatgggttataaaataagtactaattaagacccaaattatcttt...

Basic information

species Glycine max
transcript GLYMA03G27180.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207820770|gb|GD789681.1|GD789681
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|6913153|gb|AW394683.1|AW394683
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|193445828|gb|FK414949.1|FK414949
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTC
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTC
EST: gi|7147172|gb|AW509094.1|AW509094
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|193622781|gb|FK571513.1|FK571513
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|9901575|gb|BE610543.1|BE610543
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|193559677|gb|FK515008.1|FK515008
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|14196129|gb|BE820003.2|BE820003
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|8284876|gb|BE022435.1|BE022435
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTTCCGGAGCTNNCAGTCTTCCTCG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACT-CCGGAGCT--CAGTCTTCCTCG
EST: gi|208275228|gb|GE068048.1|GE068048
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|8285524|gb|BE023083.1|BE023083
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|193471780|gb|FK435719.1|FK435719
EST:     GTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: GTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|208282388|gb|GE075110.1|GE075110
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGG
EST: gi|10236075|gb|BE805023.1|BE805023
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|193516998|gb|FK476080.1|FK476080
EST:     TCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: TCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|193465461|gb|FK432436.1|FK432436
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|193500045|gb|FK463926.1|FK463926
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
EST: gi|193333184|gb|FK298718.1|FK298718
EST:     ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAA                         GATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG
genomic: ACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaacctt ... tttttggcagGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCAGGAAGAGATTGGCAGATCATAATCGCCGCAGAAGAAAAACACAGCAACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAgtacaaccttctctcttaaattcttaattattccaactcttatttctaatttttgtcatgggttataaaataagtactaattaagacccaaattatcttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA