Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCACACTGGCTTGTGGTGCACAGAGCTATAATGGCTATAAAAGATGTGGATGGGATGCTTTCTTCCTTGGATCCTGAGTACTATGATATCCTAATGAAgtgagtggcaacatttcttgtttttgaattcattttacatgtcaattttaacttggctagcttcttattcttttagaatacaaatttgcttggatgatgg...

Basic information

species Glycine max
transcript GLYMA03G26690.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G26690.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv15s0021g01870.t01 (Vitis vinifera), 5'ss of exon 3
CGGCACACTGGCTTGTGGTGCACAGAGCTATAATGGCTATAAAAGATGTGGATGGGATGCTTTCTTCCTTGGATCCTGAGTACTATGATATCCTAATGAAgtgagtggcaacatttcttgtttttgaattcattttacatgtcaattttaacttggctagcttcttattcttttagaatacaaatttgcttggatgatgg-----
| ||  | ||| | |||||||| |||||||| ||||| |||||||||||||||    || | ||||| |||||||||||||||||||||||||| ||||||| |||   ||   ||  | ||  | | ||| ||  |  | | | |||||       || ||| || || | ||    | |||    || || ||  |       
CTGCTAATTGGATAGTGGTGCATAGAGCTATGATGGCAATAAAAGATGTGGATTCATTGTTCTCTTCTTTGGATCCTGAGTACTATGATATCCTCATGAAgtaagt--taaacctttgtattcgtcacttctttacaattctgatttttaggagaattatctttttcttatcttg---ttcaatcaagcatgaatattaattgat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10235705|gb|BE804593.1|BE804593
EST:     GATGGGATGCTTTCTTCCTTGGATCCTGAGTACTATGATATCCTAATGAA                         GTACTTGTATAGAGGCTTAGCTACCGGAGATCGCCCGACCTGTGACCAATG
genomic: GATGGGATGCTTTCTTCCTTGGATCCTGAGTACTATGATATCCTAATGAAgtgagtggca ... tttgtcatagGTACTTGTATAGAGGCTTAGCTACCGGAGATCGCCCGACCTGTGACCAATG