Sequence
atgc intronic sequence ATGC exonic sequenceGGTTTTGTTTCCAAACAAGAAGTGATGTAGATGTGCTTGATGATGGTTATAAATGGAGGAAGTATGGTCAGAAAGTTGTCAAGAATAGCCTTCACCCAAGgtaatatatatataatccttgaaccttaattaccccttgctttcttaattatatagttttgctcagttttgcaagttctttgaataaatttgaagatcat...
Basic information
species | Glycine max |
transcript | GLYMA03G25770.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G25770.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os04g46060.1 (Oryza sativa), 5'ss of exon 3
GGTTTTGTTTCCAAACAAGAAGTGATGTAGATGTGCTTGATGATGGTTATAAATGGAGGAAGTATGGTCAGAAAGTTGTCAAGAATAGCCTTCACCCAAGgta-atatatatataatccttgaaccttaattaccccttgctttcttaattatatagttttgctcagttttgcaagt-tctttgaataaatttgaagatcat
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GGTTCTGCTTCCAGACCAGGAGCGATGTGGATGTGCTGGACGACGGCTACAAGTGGAGGAAGTATGGCCAGAAGGTTGTCAAGAACAGCCTCCACCCAAGgtatatatatacacgaaacataatacataa--attgagagatatgcaacccctagaggttcttccacagctgctaatataattaacagaagtctaccatagc
upper sequence: GLYMA03G25770.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G377217_T01 (Zea mays), 5'ss of exon 3
GGTTTTGTTTCCAAACAAGAAGTGATGTAGATGTGCTTGATGATGGTTATAAATGGAGGAAGTATGGTCAGAAAGTTGTCAAGAATAGCCTTCACCCAAGgta------atatatat-ataatccttgaaccttaattaccccttgctttcttaattatata-gttttgctcagttttgcaagttctttgaataaatttgaagatcat
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GGTTTTGCTTCCAGACCAGAAGCGACGTGGATGTACTGGATGATGGCTACAAGTGGAGGAAGTACGGCCAGAAGGTTGTCAAGAACAGCCTCCATCCAAGgtatctgcaatccacgtcatattccatgaatc--gatttgtacacaccc-catacgtacatgcggcatgctaagctttcc---ttctgttggttattacgaa--ttaa
upper sequence: GLYMA03G25770.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G377217_T02 (Zea mays), 5'ss of exon 3
GGTTTTGTTTCCAAACAAGAAGTGATGTAGATGTGCTTGATGATGGTTATAAATGGAGGAAGTATGGTCAGAAAGTTGTCAAGAATAGCCTTCACCCAAGgta------atatatat-ataatccttgaacct-----taattaccccttgctttctta----attatatagttttgctcagttttgcaagttctttgaataaatttgaagatcat-----------------------------------------------------------------------------
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GGTTTTGCTTCCAGACCAGAAGCGACGTGGATGTACTGGATGATGGCTACAAGTGGAGGAAGTACGGCCAGAAGGTTGTCAAGAACAGCCTCCATCCAAGgtatctgcaatccacgtcatattccatgaatcgatttgtacacaccccatacgtacatgcggcatgctaagctttccttctgttggttattacgaattaatatgcctggaagctaggagattaattaacaagtaaatcatagatggttaattttatgctatattctagttacatttcgtctctatttatgcag
upper sequence: GLYMA03G25770.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G44745.1 (Arabidopsis thaliana), 5'ss of exon 3
GGTTTTGTTTCCAAACAAGAAGTGATGTAGATGTGCTTGATGATGGTTATAAATGGAGGAAGTATGGTCAGAAAGTTGTCAAGAATAGCCTTCACCCAAGgtaatatatatataatccttgaaccttaattacc-ccttgctttcttaattatatagttttgctcagttttgcaagt--tctttgaata-aatttgaagatcat---
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GATTCTGTTTCCAAACCAAAAGCGATGTTGATGTTCTTGACGATGGCTACAAATGGCGTAAATATGGTCAGAAAGTCGTCAAGAACAGCCTTCACCCCAGgtacta-------aattagttaattatcatcaccaccacatatatgtgactgcttaggcttcattaactttaccaatagtttcctaatataacatgtccttaattagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192309640|gb|FK000218.1|FK000218EST: AAATGGAGGAAGTATGGTCAGAAAGTTGTCAAGAATAGCCTTCACCCAAG AAGCTACTACCGCTGTACCCATAACAACTGTAGGGTGAAGAAAAGAGTTGA
genomic: AAATGGAGGAAGTATGGTCAGAAAGTTGTCAAGAATAGCCTTCACCCAAGgtaatatata ... atatgagcagAAGCTACTACCGCTGTACCCATAACAACTGTAGGGTGAAGAAAAGAGTTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTTTTGTTTCCAAACAAGAAGTGATGTAGATGTGCTTGATGATGGTTATAAATGGAGGAAGTATGGTCAGAAAGTTGTCAAGAATAGCCTTCACCCAAGgtaatatatatataatccttgaaccttaattaccccttgctttcttaattatatagttttgctcagttttgcaagttctttgaataaatttgaagatcat
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA