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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGCCGAAGACTTGCAAGGGAGAATGCAAAGGACATCATTGCTTGTGGTTTTGACATTTCAAAGACATTCATCTTCTCTGATTTCAATTATGTTGGCGGgtgagttttgaatgcaggtttgccctgataatacattttcaattatgctttcctattgtatgtggaaattttgttaaatcataggttagttaaagtttta...

Basic information

species Glycine max
transcript GLYMA03G25740.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G25740.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os12g35570.3 (Oryza sativa), 5'ss of exon 3
AGTGCCGAAGACTTGCAAGGGAGAATGCAAAGGACATCATTGCTTGTGGTTTTGACATTTCAAAGACATTCATCTTCTCTGATTTCAATTATGTTGGCGGgtgag-----ttttgaatgcaggtttgccctgataatacattttcaatta----------tgctttcctattgtatgtggaaattttgttaaatcataggttagttaaagtttta----------------------
|      ||| |||||  | || |||||||| || |||||||||||||| |||||  |   || ||| ||||| ||||||||||| ||||||||||| |||| ||     | || | || ||  |||   | ||  | |||||   | ||          || | | ||  |      | || | |||   | | ||   ||   || |    ||                      
AAACTAAAAGGCTTGCCCGTGAAAATGCAAAAGATATCATTGCTTGTGGATTTGATGTCGAAAGGACTTTCATTTTCTCTGATTTTAATTATGTTGGAGGgtaaggttcttcttaactgtagtcttgattt-atctttcatttatgactaatttaatgactgttcttctgctaagcaagtaattcttga-gatttatttattctatagaaaagtaatcctctgtcattttcttacag

upper sequence: GLYMA03G25740.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0028g03370.t01 (Vitis vinifera), 5'ss of exon 3
AGTGCCGAAGACTTGCAAGGGAGAATGCAAAGGACATCATTGCTTGTGGTTTTGACATTTCAAAGACATTCATCTTCTCTGATTTCAATTATGTTGGCGGgtgagttttgaatgcaggtttgccctgataatacattttcaattatgctttcctattgtatgtggaaattttgtt-aaatcataggttagttaaagtttta----
|  ||| |||||||||  | |||||||| || ||||| || || ||||||||||||||||| |  || ||||| ||||| |||||  |||||||||| |||| |||  |  |||||  |      |    |   ||||  | |     | | ||| || |  |  ||||||  || |||||| |   || ||| ||| ||     
AAAGCCAAAGACTTGCTCGTGAGAATGCTAAAGACATTATAGCATGTGGTTTTGACATTTCTAGAACCTTCATTTTCTCAGATTTTGATTATGTTGGAGGgttagtaat--atgcatatcaagtttagctaacaatttagagtacaagtattctagtg-acatttaaatttcattgaaatcacaa--taattacagtattgcttc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|112361194|gb|EE400179.1|EE400179
EST:     GACATTTCAAAGACATTCATCTTCTCTGATTTCAATTATGTTGGCGG                         TTCCTTCTACAAGAACATGTGTGAGGTTGGGAAGCGTGTGACTTATAACCA
genomic: GACATTTCAAAGACATTCATCTTCTCTGATTTCAATTATGTTGGCGGgtgagttttg ... tcctttccagTTCCTTCTACAAGAACATGTGTGAGGTTGGGAAGCGTGTGACTTATAACCA
EST: gi|7686161|gb|AW756809.1|AW756809
EST:     TTTGACATTTCAAAGACATTCATCTTCTCTGATTTCAATTATGTTGGCGG                         TTCCTTCTACAAGAACATGTGTGAGGTTGGGAAGCGTGTGACTTATAACCA
genomic: TTTGACATTTCAAAGACATTCATCTTCTCTGATTTCAATTATGTTGGCGGgtgagttttg ... tcctttccagTTCCTTCTACAAGAACATGTGTGAGGTTGGGAAGCGTGTGACTTATAACCA
EST: gi|20811614|gb|BQ296092.1|BQ296092
EST:     TTTGACATTTCAAAGACATTCATCTTCTCTGATTTCAATTATGTTGGCGG                         TTCCTTCTACAAGAACATGTGTGAGGTTGGGAAGCGTGTGACTTATAACCA
genomic: TTTGACATTTCAAAGACATTCATCTTCTCTGATTTCAATTATGTTGGCGGgtgagttttg ... tcctttccagTTCCTTCTACAAGAACATGTGTGAGGTTGGGAAGCGTGTGACTTATAACCA
EST: gi|26047670|gb|CA784386.1|CA784386
EST:     TTTGACATTTCAAAGACATTCATCTTCTCTGATTTCAATTATGTTGGCGG                         TTCCTTCTACAAGAACATGTGTGAGGTTGGGAAGCGTGTGACTTATAACCA
genomic: TTTGACATTTCAAAGACATTCATCTTCTCTGATTTCAATTATGTTGGCGGgtgagttttg ... tcctttccagTTCCTTCTACAAGAACATGTGTGAGGTTGGGAAGCGTGTGACTTATAACCA