Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCACATTACCATAAATGTGTGAAATTCTATGATGGACTTTCGAAGCAGCTTGTGCATCAAGGTCATGTACTAGATCTTTTTGCTTGTGCTCTTGATCAGgtaatgttttcacttttatcaactgaccttttctggttggtacacagcattttgtctgtttaaaagttgaccatgtttatctctgttttccacctaaaga...

Basic information

species Glycine max
transcript GLYMA03G22740.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G22740.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os08g36994.1 (Oryza sativa), 5'ss of exon 5
GCCACATTACCATAAATGTGTGAAATTCTATGATGGACTTTCGAAGCAGCTTGTGCATCAAGGTCATGTACTAGATCTTTTTGCTTGTGCTCTTGATCAGg-----taatgttttcact-tttatcaactgacc--ttttctggttggtacacagcattttgtctgtttaaaagttgaccatgtttatctctgttttccacctaaaga
 |||| |||    |||  ||| ||||||||||| |   | || ||||||||||| |||||||| ||||| || ||| ||||||| ||||| ||||| ||||     |  | || ||||| |||||||  | |     | ||       | ||  |||     ||    ||  |  | |     |  |    | ||||           
TCCACTTTATACCAAAGCTGTTAAATTCTATGAGGAGATCTCAAAGCAGCTTGTACATCAAGGCCATGTGCTTGATTTTTTTGCATGTGCACTTGACCAGgtttgctgcttttctcactgtttatcatttaataagctatccacccatttcatcgcaaaggatc-acatatcaacttattgaatgaagtattattttattt-------

upper sequence: GLYMA03G22740.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G21630.1 (Arabidopsis thaliana), 5'ss of exon 2
GCCACATTACCATAAATGTGTGAAATTCTATGATGGACTTTCGAAGCAGCTTGTGCATCAAGGTCATGTACTAGATCTTTTTGCTTGTGCTCTTGATCAGgtaatgttttcacttttatcaactgaccttttctggttggtacacagcattttgtctgtttaaaagttgaccatgtttatctctgttttccacctaaaga
     ||||||| |||  |||  ||||||||||    ||| |||| || ||||| |||||||||||||| || ||| |||||||| || || |||||||||| ||         | | |  |   | || |  | ||| ||||      | ||   |||||   || | | |   ||||| |    | | || ||  || 
TATGTATTACCACAAAGCTGTTGAATTCTATGAGATGCTTGCGAAACAACTTGTTCATCAAGGTCATGTTCTTGATGTTTTTGCTAGTTCTGTTGATCAGgtgat---------tctgtggaaatatctgtcattgttagtac----tgtctttcttgttttgtagct-atctcttttatttaatatgtgcatctctag-

upper sequence: GLYMA03G22740.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 3
GCCACATTACCATAAATGTGTGAAATTCTATGATGGACTTTCGAAGCAGCTTGTGCATCAAGGTCATGTACTAGATCTTTTTGCTTGTGCTCTTGATCAGgtaatgtttt-cacttttatcaactgaccttttctggttggtacacagcattttgtctgtttaaaagttgaccatgttta-----tctctgttttccacctaaaga
 || ||||| |||||   |||||| || ||||| |||||| | ||||||||||| |||||||| |||||||| ||||| ||||||||||| ||||| |||||||| |||  |  | || | | | |  || ||    |    |  | |  |      || |||   | ||   || ||||     | || | ||| |  |      
TCCTCATTATCATAAGGCTGTGAAGTTTTATGAGGGACTTGCAAAGCAGCTTGTACATCAAGGACATGTACTTGATCTGTTTGCTTGTGCCCTTGACCAGgtaatatttagctttcttgttatccggactattaatttccacatcctgtgtaaatattgattatgggatggtgatatttactagatttcagattttcctc------