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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTGCCAAGAAGCAGAGGTTGATGTGGGCTTCAACAAATGTGAAAAATCCATCTTACCCTGACACGTTTTATGTTAATTCTGTTATTGGACGAGATACAgtaagttatatcggtttccttatttttttaccttgactggatggccatgtgggctaatatggattaatgttggtgtgaaaaagcttaaagttcagatcattcattaataggttgctgaaataaccttgcgtttatttggtgcctctatag

Basic information

species Glycine max
transcript GLYMA03G16940.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G16940.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g70170.1 (Oryza sativa), 5'ss of exon 5
AGGTGCCAAGAAGCAGAGGTTGATGTGGGCTTCAACAAATGTGAAAAATCCATCTTACCCTGACACGTTTTATGTTAATTCTGTTATTGGACGAGATACAgtaagttatatcggtttccttatttttttaccttgactggatggccatgtgggct-aatatggattaatgtt--ggtgtgaaaaagctta-aagttcagatcattcattaataggttgctgaaataaccttgcgtttatttggtgcctctatag
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AGGTGCCAAGAAGCAGAGGTTGTTGTGGGCATCTACCAGTGTGAAGAACCCTGCATACCCAGACACTCTTTACGTGGATCCTCTCATCGGACCTGACACCgtgagtttccacagcaaatttacttcatcttatcatctagattgttggaatagctgaatagagctcgacattccatcatacacatgggcataatttcgaagcaaatgctaactgtgcgctttcag-----------------------------