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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCTAGCAAATTTGGTTGGTTATTGCTATGAAGGGGAAGAGAGGCTGCTAGTTGCAGAGTTTATGCCACATGAAACTCTGGCCAAGCATCTCTTTCATTgtgagttctttgtgaataccattaacttttatgttaatctttgttgggttttaaatatttccttaaattgtggtcatatgccttttaattctgaacaaaaataaatcatggtctatttggtgcag

Basic information

species Glycine max
transcript GLYMA03G15830.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G15830.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g01520.t01 (Vitis vinifera), 5'ss of exon 3
CGTCTAGCAAATTTGGTTGGTTATTGCTATGAAGGGGAAGAGAGGCTGCTAGTTGCAGAGTTTATGCCACATGAAACTCTGGCCAAGCATCTCTTTCATTgtgagttctttgtgaataccattaacttttatgttaatctttg--ttgggttttaaatatttccttaaattgtggtcatatgccttttaattctgaacaaaaataaatcatggtctatttggtgcag
 |  |||| |||||| |||| | ||||| |||||| || |||||  |||| || ||||||||||||||| |||||||||| || |||||||| ||||| |||||||  ||| ||| |  |  ||  | |  | || |  |||   |   || |  ||| | | ||||       || || |   ||||   |   |     ||  |                     
AGATTAGCGAATTTGATTGGATGTTGCTGTGAAGGTGATGAGAGATTGCTCGTGGCAGAGTTTATGCCAAATGAAACTCTTGCGAAGCATCTTTTTCACTgtgagtgtttt-tgagtttctctatatgtgtttttgaaatttagttcctgtgtggaatgtgtgcttagt-----gttatgtaaatttttgctgctagtgtgaaaga---------------------