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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGTCAAACATTTCTGTTGGTGCTTCTGGTGCACTTTTTGGCTTGCTGGGAGGCATGCTTTCAGAACTCATTACTAACTGGTCTATATATGATAACAAGgtgcttaataaatttctcatttaactgagtttttcaaaaggaaagatcatgcttttaaaagcaacctactgacaatcaagattttcttttcatgtgaag

Basic information

species Glycine max
transcript GLYMA03G13780.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G13780.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g00470.t01 (Vitis vinifera), 5'ss of exon 3
CCAGTCAAACATTTCTGTTGGTGCTTCTGGTGCACTTTTTGGCTTGCTGGGAGGCATGCTTTCAGAACTCATTACTAACTGGTCTATATATGATAACAAGgtgcttaataa-atttctcatttaactgagtttttcaaaaggaaagatcatgcttttaaaagcaaccta-ctgacaatcaagattttcttttcatgtgaag
||||   ||||| ||||||||||| || |||||||| ||||| || || |||||||||||||| || ||||||||||| ||||| ||||||| ||| ||||| ||||  |    ||||||  | ||| | |  |  |     |   |   |  ||||  || |    || || |||||  |     | | ||||       
CCAGGAGAACATCTCTGTTGGTGCCTCCGGTGCACTCTTTGGATTACTTGGAGGCATGCTTTCTGAGCTCATTACTAATTGGTCAATATATGCTAATAAGgtacttatgagtggttctcagatgacttaatcgtgaatctctagctagttttatttttgaacccgtttatcttacaatttattgagtgtgttcag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7640044|gb|AW734353.1|AW734353
EST:     GAGGCATGCTTTCAGAACTCATTACTAACTGGTCTATATATGATAACAAG                         CTAACAGCACTCCTCACCCTTGTGATCATCATTGTTATCAATCTAGCAGTT
genomic: GAGGCATGCTTTCAGAACTCATTACTAACTGGTCTATATATGATAACAAGgtgcttaata ... tcatgtgaagCTAACAGCACTCCTCACCCTTGTGATCATCATTGTTATCAATCTAGCAGTT
EST: gi|9900523|gb|BE609491.1|BE609491
EST:     GAGGCATGCTTTCAGAACTCATTACTAACTGGTCTATATATGATAACAAG                         CTAACAGCACTCCTCACCCTTGTGATCATCATTGTTATCAATCTAGCAGTT
genomic: GAGGCATGCTTTCAGAACTCATTACTAACTGGTCTATATATGATAACAAGgtgcttaata ... tcatgtgaagCTAACAGCACTCCTCACCCTTGTGATCATCATTGTTATCAATCTAGCAGTT
EST: gi|9900517|gb|BE609485.1|BE609485
EST:     GAGGCATGCTTTCAGAACTCATTACTAACTGGTCTATATATGATAACAAG                         CTAACAGCACTCCTCACCCTTGTGATCATCATTGTTATCAATCTAGCAGTT
genomic: GAGGCATGCTTTCAGAACTCATTACTAACTGGTCTATATATGATAACAAGgtgcttaata ... tcatgtgaagCTAACAGCACTCCTCACCCTTGTGATCATCATTGTTATCAATCTAGCAGTT
EST: gi|16343586|gb|BI969181.1|BI969181
EST:     NAGGCATGCTTTCAGAACTCATTACTAACTGGTCTATATATGATAACAAG                         CTAACAGCACTCCTCACCCTTGTGATCATCATTGTTATCAATCTAGCAGTT
genomic: GAGGCATGCTTTCAGAACTCATTACTAACTGGTCTATATATGATAACAAGgtgcttaata ... tcatgtgaagCTAACAGCACTCCTCACCCTTGTGATCATCATTGTTATCAATCTAGCAGTT
EST: gi|207690410|gb|GD672999.1|GD672999
EST:     GAGGCATGCTTTCAGAACTCATTACTAACTGGTCTATATATGATAACAAG                         CTAACAGCACTCCTCACCCTTGTGATCATCATTGTTATCAATCTAGCAGTT
genomic: GAGGCATGCTTTCAGAACTCATTACTAACTGGTCTATATATGATAACAAGgtgcttaata ... tcatgtgaagCTAACAGCACTCCTCACCCTTGTGATCATCATTGTTATCAATCTAGCAGTT