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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTAACATATAGAGAAGTTATTGCCATCTTGATGCAGCGCCATGTTCTTGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGgtatgtacatttttaaacttggttgccatatagtgttgcttgttatgaccaaattattgttcgtttggatatctggacaatattgtcacttttgcatattcatgtcaagattttttaattgagttttggacaattttgaccag

Basic information

species Glycine max
transcript GLYMA03G06440.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G06440.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g07150.t01 (Vitis vinifera), 5'ss of exon 3
GCTCTAACATATAGAGAAGTTATTGCCATCTTGATGCAGCGCCATGTTCTTGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGgtatgtacatttttaaacttggttgccatatagtgttgcttgttatgaccaaattattgttcgtttggatatctggacaatattgtcacttttgcatattcatgtcaagattttttaattgagttttggacaattttgaccag
||||| |||||| | || || |||||||| |||||||| || |||||| | |||||||| ||||| ||||| || |||||||| ||  | || |||||||||||| ||| |    |||       | |||||  |    || || |   || |||  | || |   |  | | |  |||  ||       |||| |  ||       |||  | |                            
GCTCTCACATATCGTGAGGTCATTGCCATTTTGATGCAACGTCATGTTTTGGTTGATGGGAAGGTCAGGACCGATAAGACATATCCCTCAGGCTTCATGGgtatgcacactcc--aac-------caatatacagccaattattctttgcatatttctttttgagagccttttttcacacaat------ctttgtaactttgcaatgagaaatat----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298188907|gb|HO035600.1|HO035600
EST:     TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGG                         ATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
genomic: TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGgtatgtacat ... ttttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
EST: gi|151396175|gb|EV266052.1|EV266052
EST:     TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGG                         ATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
genomic: TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGgtatgtacat ... ttttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
EST: gi|192300483|gb|FG987910.1|FG987910
EST:     TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGG                         ATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
genomic: TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGgtatgtacat ... ttttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
EST: gi|7284412|gb|AW597004.1|AW597004
EST:     TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGG                         ATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
genomic: TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGgtatgtacat ... ttttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
EST: gi|9203665|gb|BE329889.1|BE329889
EST:     TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGG                         ATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
genomic: TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGgtatgtacat ... ttttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
EST: gi|298196174|gb|HO044565.1|HO044565
EST:     TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGG                         ATGTTGTTTCTATTCCCAAAACAAACGGAAATTTCCGTCTACTGTATGACA
genomic: TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGgtatgtacat ... ttttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
EST: gi|9986822|gb|BE660930.1|BE660930
EST:     TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGG                         ATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
genomic: TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGgtatgtacat ... ttttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
EST: gi|298190510|gb|HO032631.1|HO032631
EST:     TGTTGATGGCAAGGTTAGAACAGACAAGACATACCCTGCTGGTTTCACGG                         ATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
genomic: TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGgtatgtacat ... ttttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
EST: gi|13789053|gb|BG651644.1|BG651644
EST:     TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGG                         ATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
genomic: TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGgtatgtacat ... ttttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
EST: gi|298186402|gb|HO037035.1|HO037035
EST:     TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGG                         ATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
genomic: TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGgtatgtacat ... ttttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
EST: gi|17401982|gb|BM178764.1|BM178764
EST:     TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGG                         ATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA
genomic: TGTTGATGGCAAGGTTAGGACAGACAAGACATACCCTGCTGGTTTCATGGgtatgtacat ... ttttgaccagATGTTGTTTCTATTCCCAAAACAAACGAAAATTTCCGTCTACTGTATGACA