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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATTTTGGGAGACTGGAGTTCTTGGACAGGTGCTGTACCTTGAAGCACATGCTATTGGAATCTCAGCAACTGGAATTGGTTGTTTCTTTGATAACCCCGgtatgattctttgttttcaccattgctttgagaacatttgtccggtggcagttatttttggtaaatattttttttttgctccaagtccttgccatgttat...

Basic information

species Glycine max
transcript GLYMA03G03280.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G03280.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os10g11340.1 (Oryza sativa), 5'ss of exon 2
TTATTTTGGGAGACTGGAGTTCTTGGACAGGTGCTGTACCTTGAAGCACATGCTATTGGAATCTCAGCAACTGGAATTGGTTGTTTCTTTGATAACCCCGgtatgattctttgttttcaccattgctttgagaacatttgtccggtggcagttatttttggtaaatattttttttttgctccaagtccttgccatgttat----
|| |||||||||||||| |||||||| || || || |||||||| || |||||| ||||||| || || || || |||||||| | ||||||| |  | |||| |   | |  ||       |  |   |  |    || ||  ||   |  ||   |     |     |||    |   | || | |    |   ||||    
TTGTTTTGGGAGACTGGTGTTCTTGGTCAAGTTCTTTACCTTGAGGCCCATGCTGTTGGAATATCTGCGACAGGGATTGGTTGCTACTTTGATGATGCTGgtaagtagcatcattcgagttttaacacaggaa----ttttcaagttttaaatagcatgaaccacatcatttgacatctacaaatttcacttcgatttatccat

upper sequence: GLYMA03G03280.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G467466_T01 (Zea mays), 5'ss of exon 3
TTATTTTGGGAGACTGGAGTTCTTGGACAGGTGCTGTACCTTGAAGCACATGCTATTGGAATCTCAGCAACTGGAATTGGTTGTTTCTTTGATAACCCCGgtatgattctttgttttcaccattgctttgaga-acatttgtccggtggcagttatttttggtaaatattttttttttgctccaagtccttgccatgttat-
|| || |||||||||||  ||||||| || ||||| |||||||| || |||||||||||||| || || || ||||| || || | ||||||| |  | |||| | |   ||    |    || |||     | |  |||||    ||   |||| |  | | |  |||| |||||   |  |||     | | | || |  
TTGTTCTGGGAGACTGGCATTCTTGGTCAAGTGCTTTACCTTGAGGCCCATGCTATTGGAATATCTGCCACAGGAATCGGATGCTACTTTGATGATACTGgtaagttgagttaccattttaatagctcaatcatagttttgtaatttgttggttaatcatag-aggtattgtttttaatcagcaatcgtcttcta-gtaaca

upper sequence: GLYMA03G03280.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv15s0048g00430.t01 (Vitis vinifera), 5'ss of exon 2
TTATTTTGGGAGACTGGAGTTCTTGGACAGGTGCTGTACCTTGAAGCACATGCTATTGGAATCTCAGCAACTGGAATTGGTTGTTTCTTTGATAACCCCGgtatga-ttctttgttttcac---cattgctttgagaacatttgtccggtggcagttatttttg-gtaaatatttttttt-ttgctccaagtccttgccatgttat
||||||||||| ||||||||||| || |||||| |||||||||||||||||||| |||| || || |||||||| ||||| || | ||||||| |  | ||||||| |||||| | | |||   ||| || |    |   ||   ||| |  ||   |   |    ||   || | ||   ||  ||||  |   | |||      
TTATTTTGGGAAACTGGAGTTCTGGGTCAGGTGTTGTACCTTGAAGCACATGCTGTTGGCATATCTGCAACTGGCATTGGCTGCTACTTTGATGATGCTGgtatgacttctttttctccacttccatagcatgtgcagtgttaaaccgataacacaaaagataatatactcatgtattcaatttttccagttgactccca------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192313761|gb|FK007633.1|FK007633
EST:     TGCTATTGGAATCTCAGCAACTGGAATTGGTTGTTTCTTTGATAACCCCG                         TTCATCAGTTGCTTGGGTTAAAAGGGTCAACATTCCAGAGCCTCTATCATT
genomic: TGCTATTGGAATCTCAGCAACTGGAATTGGTTGTTTCTTTGATAACCCCGgtatgattct ... ctttttgcagTTCATCAGTTGCTTGGGTTAAAAGGGTCAACATTCCAGAGCCTCTATCATT