1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCAGACCTGCTTGCGAAATATGGAGGTGTTGCTCCAAAAATGGCAGAAGAAGCTCACTCAAAAGTTATAGACCAGgtacatcattcctgtccttttctttatatatcccagctagaacacattttgtataggtaggtcagggcacgcaaggtatgtcttgagtattatttgttca...
species | Glycine max |
transcript | GLYMA03G03250.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTGTTGCTCCAAAAATGGCAGAAGAAGCTCACTCAAAAGTTATAGACCAG GTTGTGCAAGAAGCCCTTGATAAAGCTTATCTGACCGAGEST: gi|19345744|gb|BM890624.1|BM890624
genomic: GTGTTGCTCCAAAAATGGCAGAAGAAGCTCACTCAAAAGTTATAGACCAGgtacatcatt ... ttcattatagGTTGTGCAAGAAGCCCTTGATAAAGCTTATCTGACCGAG
EST: GTGTTGCTCCAAAAATGGCAGAAGAAGCTCACTCAAAAGTTATAGACCAG GTTGTGCAAGAAGCEST: gi|51345405|gb|CO986138.1|CO986138
genomic: GTGTTGCTCCAAAAATGGCAGAAGAAGCTCACTCAAAAGTTATAGACCAGgtacatcatt ... ttcattatagGTTGTGCAAGAAGC
EST: GTGTTGCTCCAAAAATGGCAGAAGAAGCTCACTCAAAAGTTATAGACCAG GTTGTGCAAGAAGCCCTTGATAAAGCTTATCTGACCGAGAAGGATCTTACTEST: gi|13181288|gb|BG352628.1|BG352628
genomic: GTGTTGCTCCAAAAATGGCAGAAGAAGCTCACTCAAAAGTTATAGACCAGgtacatcatt ... ttcattatagGTTGTGCAAGAAGCCCTTGATAAAGCTTATCTGACCGAGAAGGATCTTACT
EST: GTGTTGCTCCAAAAATGGCAGAAGAAGCTCACTCAAAAGTTATAGACCAG GTTGTGCAAGAAGCCCTTGATAAAGC
genomic: GTGTTGCTCCAAAAATGGCAGAAGAAGCTCACTCAAAAGTTATAGACCAGgtacatcatt ... ttcattatagGTTGTGCAAGAAGCCCTTGATAAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGACCTGCTTGCGAAATATGGAGGTGTTGCTCCAAAAATGGCAGAAGAAGCTCACTCAAAAGTTATAGACCAGgtacatcattcctgtccttttctttatatatcccagctagaacacattttgtataggtaggtcagggcacgcaaggtatgtcttgagtattatttgttca
- - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA